RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 MBOAT4Q96T53 435 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 TOR3AQ9H497 397 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 ZBTB20Q9HC78 741 aaPredicted RBP16.91■□□□□ 0.3
CLN3-254ENST00000637050 ZNF160Q9HCG1 818 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 KIF17Q9P2E2 1029 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 CDV3Q9UKY7 258 aaKnown RBP16.91■□□□□ 0.3
CLN3-254ENST00000637050 ORC6Q9Y5N6 252 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 TRAPPC13A5PLN9 417 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 ALG1L2C9J202 215 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 H0YAE9 185 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 FADS1O60427 444 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 MITFO75030 526 aaPredicted RBP16.91■□□□□ 0.3
CLN3-254ENST00000637050 HPP00738 406 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 CBLP22681 906 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 CAPGP40121 348 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 FOXD4Q12950 439 aaPredicted RBP16.91■□□□□ 0.3
CLN3-254ENST00000637050 EFR3AQ14156 821 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 OR1Q1Q15612 314 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 ZIK1Q3SY52 487 aaPredicted RBP16.91■□□□□ 0.3
CLN3-254ENST00000637050 LYPD8Q6UX82 237 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 GDF7Q7Z4P5 450 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 CHERPQ8IWX8 916 aaKnown RBP16.91■□□□□ 0.3
CLN3-254ENST00000637050 ZNF440Q8IYI8 595 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 MARVELD2Q8N4S9 558 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 SLC15A4Q8N697 577 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 POGLUT1Q8NBL1 392 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 TOR1AIP2Q8NFQ8 470 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 SLC41A3Q96GZ6 507 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 ANKRD60Q9BZ19 345 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 KRT84Q9NSB2 600 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 FBXL4Q9UKA2 621 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 WDFY3Q8IZQ1 3526 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 GFRA3O60609 400 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 OR2J2O76002 312 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 DXOO77932 396 aaKnown RBP16.9■□□□□ 0.3
CLN3-254ENST00000637050 UBL4AP11441 157 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 ICAM2P13598 275 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 IL10RAQ13651 578 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 NDUFAF6Q330K2 333 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 ZNF613Q6PF04 617 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 LINC00471Q8N535 108 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 LSMEM1Q8N8F7 131 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 GATSQ8NAP1 163 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 SLC22A8Q8TCC7 542 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 PHOSPHO1Q8TCT1 267 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 CYGBQ8WWM9 190 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 SLC38A4Q969I6 547 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 EXOSC3Q9NQT5 275 aaKnown RBP16.9■□□□□ 0.3
CLN3-254ENST00000637050 P4HTMQ9NXG6 502 aa16.9■□□□□ 0.3
CLN3-254ENST00000637050 RIF1Q5UIP0 2472 aaKnown RBP16.9■□□□□ 0.3
CLN3-254ENST00000637050 H3BNH8 94 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 LYPD3O95274 346 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 ENDOUP21128 410 aaKnown RBP16.89■□□□□ 0.29
CLN3-254ENST00000637050 FBXW4P57775 412 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 KCNAB2Q13303 367 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 SKP2Q13309 424 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 GALNT5Q7Z7M9 940 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 MRGPREQ86SM8 312 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 ARMC10Q8N2F6 343 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 AQP11Q8NBQ7 271 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 HGDQ93099 445 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 RASL10BQ96S79 203 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 NIPSNAP1Q9BPW8 284 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 RTN4RQ9BZR6 473 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 TRIM2Q9C040 744 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 FAM118AQ9NWS6 357 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 SLC7A7Q9UM01 511 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 MRPS18BQ9Y676 258 aaKnown RBP16.89■□□□□ 0.29
CLN3-254ENST00000637050 PCSK5Q92824 1860 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 DMXL1Q9Y485 3027 aa16.89■□□□□ 0.29
CLN3-254ENST00000637050 A0A087WUU8 490 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 ZNF264O43296 627 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 GASTP01350 101 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 FBXO45P0C2W1 286 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 CDH2P19022 906 aaPredicted RBP16.88■□□□□ 0.29
CLN3-254ENST00000637050 EVI2BP34910 448 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 TMED10P49755 219 aaKnown RBP16.88■□□□□ 0.29
CLN3-254ENST00000637050 USP51Q70EK9 711 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 NUP54Q7Z3B4 507 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 MARCH3Q86UD3 253 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 RAB43Q86YS6 212 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 NKAIN4Q8IVV8 208 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 IL22RA1Q8N6P7 574 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 OR4K5Q8NGD3 323 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 ADAMTS17Q8TE56 1095 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 RNF138Q8WVD3 245 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 TTC9Q92623 222 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 ARSGQ96EG1 525 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 CNBD2Q96M20 576 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 PRSS27Q9BQR3 290 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 TBL1XR1Q9BZK7 514 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 CXorf56Q9H5V9 222 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 TMEM27Q9HBJ8 222 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 PAPOLBQ9NRJ5 636 aaKnown RBP16.88■□□□□ 0.29
CLN3-254ENST00000637050 IL17BQ9UHF5 180 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 MGAT4BQ9UQ53 548 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 POFUT2Q9Y2G5 429 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 GVINP1Q7Z2Y8 2422 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 EXPH5Q8NEV8 1989 aa16.88■□□□□ 0.29
CLN3-254ENST00000637050 A0A0B4J2E0 115 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms