RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 FBXW4P57775 412 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 RBBP4Q09028 425 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 SCARB2Q14108 478 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 RCN1Q15293 331 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 NCCRP1Q6ZVX7 275 aaPredicted RBP11.54□□□□□ -0.56
PNKP-217ENST00000625216 WDR53Q7Z5U6 358 aaPredicted RBP11.54□□□□□ -0.56
PNKP-217ENST00000625216 AQP12AQ8IXF9 295 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 ADGRG5Q8IZF4 528 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 C11orf65Q8NCR3 313 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 OR52R1Q8NGF1 315 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 LILRB4Q8NHJ6 448 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 STMN2Q93045 179 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 OR7D2Q96RA2 312 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 EXO5Q9H790 373 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 GORASP2Q9H8Y8 452 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 RNPEPL1Q9HAU8 725 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 S100A14Q9HCY8 104 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 A4GALTQ9NPC4 353 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 PNPLA3Q9NST1 481 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 NKX1-2Q9UD57 310 aaPredicted RBP11.54□□□□□ -0.56
PNKP-217ENST00000625216 LIPGQ9Y5X9 500 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 KCNE3Q9Y6H6 103 aa11.54□□□□□ -0.56
PNKP-217ENST00000625216 CACNA1DQ01668 2161 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 FKBP6O75344 327 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 BCHEP06276 602 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 CELA3AP09093 270 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 ELAVL4P26378 380 aaKnown RBP11.53□□□□□ -0.56
PNKP-217ENST00000625216 MAGEA8P43361 318 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 EMDP50402 254 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 CRYBA2P53672 197 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 CDK6Q00534 326 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 PMPCAQ10713 525 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 SNTA1Q13424 505 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 VEZF1Q14119 521 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 CDSNQ15517 529 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 LRRC23Q53EV4 343 aaPredicted RBP11.53□□□□□ -0.56
PNKP-217ENST00000625216 RPS26P11Q5JNZ5 115 aaPredicted RBP11.53□□□□□ -0.56
PNKP-217ENST00000625216 SLC30A6Q6NXT4 461 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 CDC73Q6P1J9 531 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 ZNF585AQ6P3V2 769 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 AAGABQ6PD74 315 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 BHLHB9Q6PI77 547 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 B3GNT6Q6ZMB0 384 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 OLIG3Q7RTU3 272 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 GDF7Q7Z4P5 450 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 MARVELD2Q8N4S9 558 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 FAM86B1Q8N7N1 296 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 OR52E4Q8NGH9 312 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 OR5M9Q8NGP3 310 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 NEIL3Q8TAT5 605 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 FAM162AQ96A26 154 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 SLCO4A1Q96BD0 722 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 NTNG2Q96CW9 530 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 DUS3LQ96G46 650 aaKnown RBP11.53□□□□□ -0.56
PNKP-217ENST00000625216 TMEM19Q96HH6 336 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 TMEM41AQ96HV5 264 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 JSRP1Q96MG2 331 aaPredicted RBP11.53□□□□□ -0.56
PNKP-217ENST00000625216 ITPAQ9BY32 194 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 ACTRT3Q9BYD9 372 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 RNF6Q9Y252 685 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 DTX4Q9Y2E6 619 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 GPR55Q9Y2T6 319 aaPredicted RBP11.53□□□□□ -0.56
PNKP-217ENST00000625216 V9GYQ6 96 aa11.53□□□□□ -0.56
PNKP-217ENST00000625216 EXPH5Q8NEV8 1989 aa11.52□□□□□ -0.56
PNKP-217ENST00000625216 NCOA6Q14686 2063 aaPredicted RBP11.52□□□□□ -0.57
PNKP-217ENST00000625216 FRG2CA6NGY1 282 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 ABCB7O75027 752 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 COQ9O75208 318 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 SERPINA1P01009 418 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 HPNP05981 417 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 PRF1P14222 555 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 GDF1P27539 372 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 AQP1P29972 269 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 KDELR2P33947 212 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 MAP3K8P41279 467 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 MASP1P48740 699 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 PRIM2P49643 509 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 PCBP3P57721 371 aaKnown RBP11.52□□□□□ -0.57
PNKP-217ENST00000625216 NUP107P57740 925 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 PLCXD2Q0VAA5 305 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 ZNF155Q12901 538 aaPredicted RBP11.52□□□□□ -0.57
PNKP-217ENST00000625216 SF3B4Q15427 424 aaKnown RBP eCLIP11.52□□□□□ -0.574e-8■■■■□ 23.6
PNKP-217ENST00000625216 SYPL1Q16563 259 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 DUSP5Q16690 384 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 MTX3Q5HYI7 312 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 TIGD3Q6B0B8 471 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 ENPP6Q6UWR7 440 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 PRR22Q8IZ63 422 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 ANKFN1Q8N957 763 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 ACBD4Q8NC06 268 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 SLC16A11Q8NCK7 471 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 SLC38A5Q8WUX1 472 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 CANT1Q8WVQ1 401 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 HOXB13Q92826 284 aaPredicted RBP11.52□□□□□ -0.57
PNKP-217ENST00000625216 TMCO6Q96DC7 493 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 OMA1Q96E52 524 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 SLC35A4Q96G79 324 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 BTBD9Q96Q07 612 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 TTYH2Q9BSA4 534 aa11.52□□□□□ -0.57
PNKP-217ENST00000625216 ENKD1Q9H0I2 346 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms