RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 LCN1P31025 176 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 GABRA3P34903 492 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 UGT2B10P36537 528 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 CLK3P49761 638 aaKnown RBP17.04■□□□□ 0.32
CDX1-202ENST00000616154 TPD52P55327 224 aaPredicted RBP17.04■□□□□ 0.32
CDX1-202ENST00000616154 SIRPAP78324 504 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.04■□□□□ 0.32
CDX1-202ENST00000616154 GLYR1Q49A26 553 aaPredicted RBP17.04■□□□□ 0.32
CDX1-202ENST00000616154 EPGNQ6UW88 154 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 OR5P2Q8WZ92 322 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 PIGTQ969N2 578 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 FAM120BQ96EK7 910 aaKnown RBP17.04■□□□□ 0.32
CDX1-202ENST00000616154 ZNF845Q96IR2 970 aaPredicted RBP17.04■□□□□ 0.32
CDX1-202ENST00000616154 PIGQQ9BRB3 760 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 SLC39A3Q9BRY0 314 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 MED18Q9BUE0 208 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 PINK1Q9BXM7 581 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 BHLHE41Q9C0J9 482 aaPredicted RBP17.04■□□□□ 0.32
CDX1-202ENST00000616154 GIN1Q9NXP7 522 aa17.04■□□□□ 0.32
CDX1-202ENST00000616154 NOP53Q9NZM5 478 aaKnown RBP17.04■□□□□ 0.32
CDX1-202ENST00000616154 A0A1W2PRB8 838 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 GXYLT2A0PJZ3 443 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 TRPC5OSA6NMA1 111 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 SDHDO14521 159 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 KCNH1O95259 989 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 ACP2P11117 423 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 G6PDP11413 515 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 POU2F1P14859 743 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 CLDN8P56748 225 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 CLDN20P56880 219 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 PRR5P85299 388 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 GUSBP1Q15486 140 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 CPTPQ5TA50 214 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 METTL25Q8N6Q8 603 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 SLC16A11Q8NCK7 471 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 OR5M1Q8NGP8 315 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 RFWD2Q8NHY2 731 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 FNDC9Q8TBE3 224 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 DUSP19Q8WTR2 217 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 NUF2Q9BZD4 464 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 DUSP22Q9NRW4 184 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 KLHL14Q9P2G3 628 aa17.03■□□□□ 0.32
CDX1-202ENST00000616154 FN1P02751 2386 aaKnown RBP17.03■□□□□ 0.32
CDX1-202ENST00000616154 ROS1P08922 2347 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 H3BML4 177 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 C16orf97H3BN30 126 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 SMPD2O60906 423 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 TROVE2P10155 538 aaKnown RBP eCLIP17.02■□□□□ 0.32
CDX1-202ENST00000616154 RPS3AP61247 264 aaKnown RBP17.02■□□□□ 0.32
CDX1-202ENST00000616154 PON3Q15166 354 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 PDCD2Q16342 344 aaPredicted RBP17.02■□□□□ 0.32
CDX1-202ENST00000616154 DUSP5Q16690 384 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 TMEM44Q2T9K0 475 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 Q5PR19 223 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 CLEC9AQ6UXN8 241 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 PIGWQ7Z7B1 504 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 MARCH3Q86UD3 253 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 P3H2Q8IVL5 708 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 KRTCAP2Q8N6L1 136 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 GPR151Q8TDV0 419 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 PIK3R3Q92569 461 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 PIK3IP1Q96FE7 263 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 MARK4Q96L34 752 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 STACQ99469 402 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 PRPF18Q99633 342 aaKnown RBP17.02■□□□□ 0.32
CDX1-202ENST00000616154 NSRP1Q9H0G5 558 aaKnown RBP17.02■□□□□ 0.32
CDX1-202ENST00000616154 AKTIPQ9H8T0 292 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 HHATLQ9HCP6 504 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 NPHS2Q9NP85 383 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 EQTNQ9NQ60 294 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 AP4B1Q9Y6B7 739 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 TLN2Q9Y4G6 2542 aa17.02■□□□□ 0.32
CDX1-202ENST00000616154 ALG1L2C9J202 215 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 SNX3O60493 162 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 SOX30O94993 753 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 UTS2O95399 124 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 FAM107AO95990 144 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 FCGR2AP12318 317 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 FPR1P21462 350 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 PRIM2P49643 509 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 IDH3AP50213 366 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 C17orf67Q0P5P2 114 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 ACKR1Q16570 336 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 LSM12Q3MHD2 195 aaKnown RBP17.01■□□□□ 0.31
CDX1-202ENST00000616154 OGFOD2Q6N063 350 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 APOOLQ6UXV4 268 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 Q71RC1 249 aaPredicted RBP17.01■□□□□ 0.31
CDX1-202ENST00000616154 SFXN5Q8TD22 340 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 ACTRT2Q8TDY3 377 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 CCT8L2Q96SF2 557 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 TBL1XR1Q9BZK7 514 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 CXorf36Q9H7Y0 433 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 ZCCHC3Q9NUD5 404 aaKnown RBP17.01■□□□□ 0.31
CDX1-202ENST00000616154 PROCRQ9UNN8 238 aa17.01■□□□□ 0.31
CDX1-202ENST00000616154 FAM171A2A8MVW0 826 aa17■□□□□ 0.31
CDX1-202ENST00000616154 ANKRD28O15084 1053 aa17■□□□□ 0.31
CDX1-202ENST00000616154 KCNK2O95069 426 aa17■□□□□ 0.31
CDX1-202ENST00000616154 ANGPTL1O95841 491 aa17■□□□□ 0.31
CDX1-202ENST00000616154 HMGN2P05204 90 aaKnown RBP17■□□□□ 0.31
CDX1-202ENST00000616154 HEXAP06865 529 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms