RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 FGD3Q5JSP0 725 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 PODNL1Q6PEZ8 512 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 GDF7Q7Z4P5 450 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 RANBP3LQ86VV4 465 aaPredicted RBP13.09□□□□□ -0.31
USP39-220ENST00000613444 ZNF527Q8NB42 609 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 POGLUT1Q8NBL1 392 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 DEFB126Q9BYW3 111 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 POLR2J2Q9GZM3 115 aaKnown RBP13.09□□□□□ -0.31
USP39-220ENST00000613444 POLR2J3Q9H1A7 115 aaKnown RBP13.09□□□□□ -0.31
USP39-220ENST00000613444 SLC35A3Q9Y2D2 325 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 PCDHGB5Q9Y5G0 923 aa13.09□□□□□ -0.31
USP39-220ENST00000613444 A0A1W2PQD3 144 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 ALG1L2C9J202 215 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 SCDO00767 359 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 CCNB2O95067 398 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 NTN1O95631 604 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 GNAO1P09471 354 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 UBTFL6P0CB48 400 aaPredicted RBP13.08□□□□□ -0.31
USP39-220ENST00000613444 NAGAP17050 411 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 KRT20P35900 424 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 Q0VFX4 171 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 CAMK2BQ13554 666 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 OR1Q1Q15612 314 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 DCST1Q5T197 706 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 PLEKHM3Q6ZWE6 761 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 TAGAPQ8N103 731 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 ARMC10Q8N2F6 343 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 MARVELD2Q8N4S9 558 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 ATG16L2Q8NAA4 619 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 ADAMTS17Q8TE56 1095 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 RNF138Q8WVD3 245 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 HGDQ93099 445 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 SLC41A3Q96GZ6 507 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 NIPSNAP1Q9BPW8 284 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 ANKRD60Q9BZ19 345 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 ANKRD19PQ9H560 264 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 ZBTB20Q9HC78 741 aaPredicted RBP13.08□□□□□ -0.31
USP39-220ENST00000613444 UBAP1Q9NZ09 502 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 IL17BQ9UHF5 180 aa13.08□□□□□ -0.31
USP39-220ENST00000613444 E9PQ18 207 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 FAAHO00519 579 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 GFRA3O60609 400 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 OR2J2O76002 312 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 DXOO77932 396 aaKnown RBP13.08□□□□□ -0.32
USP39-220ENST00000613444 HPP00738 406 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 GASTP01350 101 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 ANXA8P13928 327 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 RBMS1P29558 406 aaKnown RBP13.08□□□□□ -0.32
USP39-220ENST00000613444 POLR2IP36954 125 aaKnown RBP13.08□□□□□ -0.32
USP39-220ENST00000613444 FBXW4P57775 412 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 ST3GAL3Q11203 375 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 KCNAB2Q13303 367 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 SKP2Q13309 424 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 CBLN3Q6UW01 205 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 USP51Q70EK9 711 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 MRGPREQ86SM8 312 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 LSRQ86X29 649 aaPredicted RBP13.08□□□□□ -0.32
USP39-220ENST00000613444 NKAIN4Q8IVV8 208 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 DHRSXQ8N5I4 330 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 GATSQ8NAP1 163 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 RASL10BQ96S79 203 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 PRSS27Q9BQR3 290 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 P4HTMQ9NXG6 502 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 FBXL4Q9UKA2 621 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 MED13Q9UHV7 2174 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 MPDZO75970 2070 aa13.08□□□□□ -0.32
USP39-220ENST00000613444 A0A087WUU8 490 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 H0YAE9 185 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 MAN1A2O60476 641 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 CAPGP40121 348 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 EPS8Q12929 822 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 MED21Q13503 144 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 TRAM2Q15035 370 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 RFX4Q33E94 735 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 ZNF550Q7Z398 422 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 GALNT5Q7Z7M9 940 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 LSMEM1Q8N8F7 131 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 AQP11Q8NBQ7 271 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 ZNF559Q9BR84 538 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 EXOSC3Q9NQT5 275 aaKnown RBP13.07□□□□□ -0.32
USP39-220ENST00000613444 FAM118AQ9NWS6 357 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 CDV3Q9UKY7 258 aaKnown RBP13.07□□□□□ -0.32
USP39-220ENST00000613444 TMCC3Q9ULS5 477 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 ZFHX4Q86UP3 3567 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 TRAPPC13A5PLN9 417 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 C17orf51A8MQB3 221 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 CLIC3O95833 236 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 FBXO45P0C2W1 286 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 ITGAMP11215 1152 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 UBL4AP11441 157 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 HPGDP15428 266 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 EVI2BP34910 448 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 EFR3AQ14156 821 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 TGIF1Q15583 401 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 PGBD2Q6P3X8 592 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 ZNF613Q6PF04 617 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 WDR88Q6ZMY6 472 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 MARCH3Q86UD3 253 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 OR4K5Q8NGD3 323 aa13.07□□□□□ -0.32
USP39-220ENST00000613444 PHOSPHO1Q8TCT1 267 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms