RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 FLYWCH1Q4VC44 716 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 LRRC23Q53EV4 343 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-208ENST00000597172 KLHL26Q53HC5 615 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 CYBRD1Q53TN4 286 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF468Q5VIY5 522 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-208ENST00000597172 ENPP6Q6UWR7 440 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 APOOLQ6UXV4 268 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 Q71RC1 249 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-208ENST00000597172 EIF3MQ7L2H7 374 aaKnown RBP8.64□□□□□ -1.03
TRIM28-208ENST00000597172 COMTD1Q86VU5 262 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 VRK2Q86Y07 508 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 AQP12AQ8IXF9 295 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 GALNT16Q8N428 558 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 SMYD1Q8NB12 490 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 GPR32P1Q8NGA4 272 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 PMM1Q92871 262 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 HGDQ93099 445 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 SLCO4A1Q96BD0 722 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 NSMCE2Q96MF7 247 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 COL21A1Q96P44 957 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF607Q96SK3 696 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 WFDC6Q9BQY6 131 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 LHPPQ9H008 270 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 RPH3AQ9Y2J0 694 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-208ENST00000597172 RRP15Q9Y3B9 282 aaKnown RBP8.64□□□□□ -1.03
TRIM28-208ENST00000597172 PCDHGA10Q9Y5H3 936 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 HIVEP2P31629 2446 aa8.64□□□□□ -1.03
TRIM28-208ENST00000597172 A6NL46 340 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 CLDN24A6NM45 220 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 FADS1O60427 444 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 ABCB7O75027 752 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 ICOSLGO75144 302 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 BCAS1O75363 584 aaPredicted RBP8.63□□□□□ -1.03
TRIM28-208ENST00000597172 SERPINB7O75635 380 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 OR6B1O95007 311 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 UTS2O95399 124 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 SEMG1P04279 462 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 STSP08842 583 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 PABPC4LP0CB38 370 aaKnown RBP8.63□□□□□ -1.03
TRIM28-208ENST00000597172 ATP6V1C1P21283 382 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 LCN1P31025 176 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 RNF144AP50876 292 aaPredicted RBP8.63□□□□□ -1.03
TRIM28-208ENST00000597172 ATP12AP54707 1039 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 PSMD4P55036 377 aaKnown RBP8.63□□□□□ -1.03
TRIM28-208ENST00000597172 RRADP55042 308 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 AP2B1P63010 937 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 PLAURQ03405 335 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 NTRK2Q16620 822 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 MTX3Q5HYI7 312 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 ACER2Q5QJU3 275 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 PDZK1Q5T2W1 519 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 NUP54Q7Z3B4 507 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 TSEN54Q7Z6J9 526 aaKnown RBP8.63□□□□□ -1.03
TRIM28-208ENST00000597172 VTCN1Q7Z7D3 282 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 SPATA24Q86W54 205 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 ARMC8Q8IUR7 673 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 ADGRG5Q8IZF4 528 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 EID3Q8N140 333 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 CLIP4Q8N3C7 705 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 SLC5A8Q8N695 610 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 CLEC1AQ8NC01 280 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 FDCSPQ8NFU4 85 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 OR52P1PQ8NH57 321 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 SLC22A8Q8TCC7 542 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 RNF138Q8WVD3 245 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 CANT1Q8WVQ1 401 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 NTNG2Q96CW9 530 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 DUS3LQ96G46 650 aaKnown RBP8.63□□□□□ -1.03
TRIM28-208ENST00000597172 PYURFQ96I23 114 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF354BQ96LW1 612 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 LRGUKQ96M69 825 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 NODALQ96S42 347 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 RTN4RQ9BZR6 473 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 HOXD1Q9GZZ0 328 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF552Q9H707 407 aaPredicted RBP8.63□□□□□ -1.03
TRIM28-208ENST00000597172 SH2D2AQ9NP31 389 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 DLL4Q9NR61 685 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 UBQLN4Q9NRR5 601 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 STMN3Q9NZ72 180 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 MRTO4Q9UKD2 239 aaKnown RBP8.63□□□□□ -1.03
TRIM28-208ENST00000597172 B3GNT3Q9Y2A9 372 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 NTNG1Q9Y2I2 539 aa8.63□□□□□ -1.03
TRIM28-208ENST00000597172 PDE9AO76083 593 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 STAMBPO95630 424 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 OXSR1O95747 527 aaPredicted RBP8.62□□□□□ -1.03
TRIM28-208ENST00000597172 ZNF682O95780 498 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 LGI1O95970 557 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 IFNA14P01570 189 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 DBIP07108 87 aaKnown RBP8.62□□□□□ -1.03
TRIM28-208ENST00000597172 FESP07332 822 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 THBS1P07996 1170 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 NGFRP08138 427 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 UMPSP11172 480 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 IL12BP29460 328 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 KRT20P35900 424 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 SSR4P51571 173 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 EEF1A1P68104 462 aaKnown RBP8.62□□□□□ -1.03
TRIM28-208ENST00000597172 KCNJ10P78508 379 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 HPCAP84074 193 aa8.62□□□□□ -1.03
TRIM28-208ENST00000597172 FOXD4Q12950 439 aaPredicted RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms