RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 MAMDC2Q7Z304 686 aaPredicted RBP13.6□□□□□ -0.23
UPF1-202ENST00000594243 RPRMLQ8N4K4 120 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 MARVELD2Q8N4S9 558 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 ANKFN1Q8N957 763 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 TOR1AIP2Q8NFQ8 470 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 CA5BP1Q8WTZ4 195 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 ASB5Q8WWX0 329 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 SDCCAG3Q96C92 435 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 CALHM2Q9HA72 323 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.6□□□□□ -0.23
UPF1-202ENST00000594243 SLAMF8Q9P0V8 285 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 PLEKHB1Q9UF11 243 aaPredicted RBP13.6□□□□□ -0.23
UPF1-202ENST00000594243 KCNE5Q9UJ90 142 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 ICAM5Q9UMF0 924 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 CORO2BQ9UQ03 480 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 SLC35A3Q9Y2D2 325 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 ZNF337Q9Y3M9 751 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 GMEB1Q9Y692 573 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 AP4B1Q9Y6B7 739 aa13.6□□□□□ -0.23
UPF1-202ENST00000594243 A1L4Q6 167 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 OR2M5A3KFT3 312 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 C7orf72A4D263 438 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 CD8B2A6NJW9 211 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 H0Y3Z8 333 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 TNFRSF21O75509 655 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 CLDN14O95500 239 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 CLDN1O95832 211 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 CHRM4P08173 479 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 TFPTP0C1Z6 253 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 CD1EP15812 388 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 ZNF708P17019 499 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 ZNF17P17021 662 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 POU3F2P20265 443 aaPredicted RBP13.59□□□□□ -0.23
UPF1-202ENST00000594243 EIF1P41567 113 aaKnown RBP13.59□□□□□ -0.23
UPF1-202ENST00000594243 CRISP3P54108 245 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 KCNJ10P78508 379 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 SRYQ05066 204 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 CBFBQ13951 182 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 FGFBP1Q14512 234 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 MAPRE2Q15555 327 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 MAPK14Q16539 360 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 TMEM44Q2T9K0 475 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 ACSF3Q4G176 576 aaPredicted RBP13.59□□□□□ -0.23
UPF1-202ENST00000594243 RIPPLY2Q5TAB7 128 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 NSUN5P2Q63ZY6 315 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 CHMP1BQ7LBR1 199 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 LACC1Q8IV20 430 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 DPP10Q8N608 796 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 MEIOBQ8N635 442 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 OR5M1Q8NGP8 315 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 OR5W2Q8NH69 310 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 ZG16BQ96DA0 208 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 TRIB1Q96RU8 372 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 LAT2Q9GZY6 243 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 SLC38A1Q9H2H9 487 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 SAR1AQ9NR31 198 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 MED17Q9NVC6 651 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 SLC25A37Q9NYZ2 338 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 VAPAQ9P0L0 249 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 L3MBTL1Q9Y468 752 aa13.59□□□□□ -0.23
UPF1-202ENST00000594243 KLF2Q9Y5W3 355 aaPredicted RBP13.59□□□□□ -0.23
UPF1-202ENST00000594243 NUP214P35658 2090 aaPredicted RBP13.59□□□□□ -0.23
UPF1-202ENST00000594243 A0A0G2JPF8 293 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 AGAP5A6NIR3 686 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 HNRNPCL2B2RXH8 293 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 HNRNPCL3B7ZW38 293 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 H3BML4 177 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 HNRNPCL1O60812 293 aaKnown RBP13.58□□□□□ -0.24
UPF1-202ENST00000594243 CYP7B1O75881 506 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 BCHEP06276 602 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 DBIP07108 87 aaKnown RBP13.58□□□□□ -0.24
UPF1-202ENST00000594243 LINGO3P0C6S8 592 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 HNRNPCL4P0DMR1 293 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 BMP2P12643 396 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 GP1BBP13224 206 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 IL7RP16871 459 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 ADH6P28332 368 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 CHRNB4P30926 498 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 TIMP3P35625 211 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 RNF144AP50876 292 aaPredicted RBP13.58□□□□□ -0.24
UPF1-202ENST00000594243 CLDN18P56856 261 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 KLF10Q13118 480 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 PLPPR5Q32ZL2 321 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 RUNDC3AQ59EK9 446 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 DLEU7Q6UYE1 221 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 MSRB3Q8IXL7 192 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 CMIPQ8IY22 773 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 PEX5LQ8IYB4 626 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 GTPBP8Q8N3Z3 284 aaPredicted RBP13.58□□□□□ -0.24
UPF1-202ENST00000594243 TMCO5AQ8N6Q1 288 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 METTL25Q8N6Q8 603 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 GPR119Q8TDV5 335 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 SLC38A5Q8WUX1 472 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 C10orf82Q8WW14 230 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 ARSGQ96EG1 525 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 UCN2Q96RP3 112 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 NSRP1Q9H0G5 558 aaKnown RBP13.58□□□□□ -0.24
UPF1-202ENST00000594243 RUBCNLQ9H714 662 aa13.58□□□□□ -0.24
UPF1-202ENST00000594243 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.58□□□□□ -0.24
UPF1-202ENST00000594243 RNF6Q9Y252 685 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms