RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 FLRT3Q9NZU0 649 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 CNIH4Q9P003 139 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 C19orf25Q9UFG5 118 aaPredicted RBP18.27■□□□□ 0.51
TRIM47-204ENST00000587339 LOXL2Q9Y4K0 774 aa18.27■□□□□ 0.51
TRIM47-204ENST00000587339 WBP4O75554 376 aaKnown RBP18.26■□□□□ 0.51
TRIM47-204ENST00000587339 RFPL3O75679 317 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 IGFBP1P08833 259 aaPredicted RBP18.26■□□□□ 0.51
TRIM47-204ENST00000587339 RNF4P78317 190 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 PLCXD2Q0VAA5 305 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 TSPAN31Q12999 210 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 SMN1Q16637 294 aaKnown RBP18.26■□□□□ 0.51
TRIM47-204ENST00000587339 DCAF12Q5T6F0 453 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 HSDL2Q6YN16 418 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 MEX3DQ86XN8 651 aaKnown RBP18.26■□□□□ 0.51
TRIM47-204ENST00000587339 LSMEM1Q8N8F7 131 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 ZNF441Q8N8Z8 693 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 NFAM1Q8NET5 270 aaPredicted RBP18.26■□□□□ 0.51
TRIM47-204ENST00000587339 APH1BQ8WW43 257 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 CDC6Q99741 560 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 TRIM2Q9C040 744 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 TPRKBQ9Y3C4 175 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 B3GALT1Q9Y5Z6 326 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 WDFY3Q8IZQ1 3526 aa18.26■□□□□ 0.51
TRIM47-204ENST00000587339 SMIM31A0A1B0GVY4 71 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 C9J4A7 227 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 TP53P04637 393 aaPredicted RBP18.25■□□□□ 0.51
TRIM47-204ENST00000587339 ABCD3P28288 659 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 LCN1P31025 176 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 ADH7P40394 386 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 INSM1Q01101 510 aaPredicted RBP18.25■□□□□ 0.51
TRIM47-204ENST00000587339 NDUFAF6Q330K2 333 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 TMEM205Q6UW68 189 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 GRHL3Q8TE85 626 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 NDUFA13Q9P0J0 144 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 PPIEQ9UNP9 301 aaKnown RBP18.25■□□□□ 0.51
TRIM47-204ENST00000587339 A0A0B4J2E0 115 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 A0A1B0GX12 115 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 C4orf47A7E2U8 309 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 TBXA2RP21731 343 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 ALDH3B2P48448 385 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 RAB15P59190 212 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 WDR88Q6ZMY6 472 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 RAB11FIP2Q7L804 512 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 SLCO6A1Q86UG4 719 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 RNF113BQ8IZP6 322 aaKnown RBP18.25■□□□□ 0.51
TRIM47-204ENST00000587339 SLC34A3Q8N130 599 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 AMER2Q8N7J2 671 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 GATSQ8NAP1 163 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 TMEM239Q8WW34 195 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 SGCDQ92629 289 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 C8orf44Q96CB5 159 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 OMA1Q96E52 524 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 WDR77Q9BQA1 342 aaPredicted RBP18.25■□□□□ 0.51
TRIM47-204ENST00000587339 POLR1BQ9H9Y6 1135 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 ZNF226Q9NYT6 803 aa18.25■□□□□ 0.51
TRIM47-204ENST00000587339 ZNF223Q9UK11 482 aaPredicted RBP18.25■□□□□ 0.51
TRIM47-204ENST00000587339 COL27A1Q8IZC6 1860 aaPredicted RBP18.25■□□□□ 0.51
TRIM47-204ENST00000587339 CACNA1HO95180 2353 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 TEX51A0A1B0GUA7 166 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 A0A1B0GWA3 101 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 CHP2O43745 196 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 PIP5K1CO60331 668 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 MPZL2O60487 215 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 ICOSLGO75144 302 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 LYPD3O95274 346 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 PTNP21246 168 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 FPR3P25089 353 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 GPR4P46093 362 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 CSNK2BP67870 215 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 PSPHP78330 225 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 SLX4IPQ5VYV7 408 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 ZNF517Q6ZMY9 492 aaPredicted RBP18.24■□□□□ 0.51
TRIM47-204ENST00000587339 KCTD8Q6ZWB6 473 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 CCDC103Q8IW40 242 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 ZNF440Q8IYI8 595 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 PHOSPHO1Q8TCT1 267 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 TP53INP1Q96A56 240 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 VMP1Q96GC9 406 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 LIN28AQ9H9Z2 209 aaKnown RBP18.24■□□□□ 0.51
TRIM47-204ENST00000587339 PAK1IP1Q9NWT1 392 aaPredicted RBP18.24■□□□□ 0.51
TRIM47-204ENST00000587339 ZNF318Q5VUA4 2279 aa18.24■□□□□ 0.51
TRIM47-204ENST00000587339 TMX2-CTNND1H3BSU7 103 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 M0R129 80 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 TNFRSF10AO00220 468 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 TSPAN2O60636 221 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 FAM20BO75063 409 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 UBL4AP11441 157 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 NRG3P56975 720 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 CD226Q15762 336 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 ISXQ2M1V0 245 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 ALG10BQ5I7T1 473 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 FNDC7Q5VTL7 733 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 FAM198BQ6UWH4 519 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 CASP12Q6UXS9 341 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 RASSF6Q6ZTQ3 369 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 PTCHD4Q6ZW05 846 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 CADM2Q8N3J6 435 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 GALNT6Q8NCL4 622 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 ZNF540Q8NDQ6 660 aa18.23■□□□□ 0.51
TRIM47-204ENST00000587339 RPS6KB2Q9UBS0 482 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms