RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 SMU1Q2TAY7 513 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 LSM12Q3MHD2 195 aaKnown RBP6.73□□□□□ -1.33
NUP88-205ENST00000572809 TNFAIP8L3Q5GJ75 292 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 CPTPQ5TA50 214 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 CES4AQ5XG92 561 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 ZCCHC12Q6PEW1 402 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 ARSKQ6UWY0 536 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 SZRD1Q7Z422 152 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 ZNF781Q8N8C0 355 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 FADS6Q8N9I5 356 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 SLC16A11Q8NCK7 471 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 NAXEQ8NCW5 288 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 OR2M3Q8NG83 312 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 OR7A2PQ8NGA2 310 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 MBD3L2Q8NHZ7 208 aaPredicted RBP6.73□□□□□ -1.33
NUP88-205ENST00000572809 FAM110BQ8TC76 370 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 OR5P2Q8WZ92 322 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 HOXB13Q92826 284 aaPredicted RBP6.73□□□□□ -1.33
NUP88-205ENST00000572809 COQ8BQ96D53 544 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 GIMAP5Q96F15 307 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 LRRC46Q96FV0 321 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 PGM2Q96G03 612 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 C16orf58Q96GQ5 468 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 SFXN2Q96NB2 322 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 TUBA1CQ9BQE3 449 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 YIPF4Q9BSR8 244 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 TBL1XR1Q9BZK7 514 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 RTN4RQ9BZR6 473 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 C20orf27Q9GZN8 174 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 PTGES2Q9H7Z7 377 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 MCCC2Q9HCC0 563 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 ATAD3AQ9NVI7 634 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 FAM120CQ9NX05 1096 aaKnown RBP6.73□□□□□ -1.33
NUP88-205ENST00000572809 FLRT3Q9NZU0 649 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 DKKL1Q9UK85 242 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 ABCG2Q9UNQ0 655 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 RPH3AQ9Y2J0 694 aaPredicted RBP6.73□□□□□ -1.33
NUP88-205ENST00000572809 RAP2CQ9Y3L5 183 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 CACNA1CQ13936 2221 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 PKDREJQ9NTG1 2253 aa6.73□□□□□ -1.33
NUP88-205ENST00000572809 ARHGAP21Q5T5U3 1957 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 C17orf51A8MQB3 221 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 B4DXG7 233 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 H0Y3Z8 333 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 CFLARO15519 480 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 TBX1O43435 398 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 KCNK2O95069 426 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 RCBTB2O95199 551 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 ANGPTL1O95841 491 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 IGKV1D-16P01601 117 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 HMGN2P05204 90 aaKnown RBP6.72□□□□□ -1.33
NUP88-205ENST00000572809 ALOX5P09917 674 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 DHRS4L1P0CG22 281 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 ACP2P11117 423 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 G6PDP11413 515 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 PEPDP12955 493 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 ZNF708P17019 499 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 HK1P19367 917 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 PRPS1L1P21108 318 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 TBXA2RP21731 343 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 TCEA1P23193 301 aaKnown RBP6.72□□□□□ -1.33
NUP88-205ENST00000572809 UQCRC1P31930 480 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 ADMP35318 185 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 OPRM1P35372 400 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 CCT3P49368 545 aaKnown RBP6.72□□□□□ -1.33
NUP88-205ENST00000572809 LHX2P50458 406 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 RPL14P50914 215 aaKnown RBP6.72□□□□□ -1.33
NUP88-205ENST00000572809 AGFG1P52594 562 aaKnown RBP6.72□□□□□ -1.33
NUP88-205ENST00000572809 ZNF136P52737 540 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 DGKQP52824 942 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 CLDN8P56748 225 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 B3GALT5-AS1P59052 145 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 KRTAP10-9P60411 292 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 STX5Q13190 355 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 STX3Q13277 289 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 DUSP5Q16690 384 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 MSMPQ1L6U9 139 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 GRAMD1BQ3KR37 738 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 GLYR1Q49A26 553 aaPredicted RBP6.72□□□□□ -1.33
NUP88-205ENST00000572809 TM4SF20Q53R12 229 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 MFSD12Q6NUT3 480 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 APOOLQ6UXV4 268 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 CHMP1BQ7LBR1 199 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 ADGRE4PQ86SQ3 457 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 RIMKLAQ8IXN7 391 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 MFSD4AQ8N468 514 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 KRTCAP2Q8N6L1 136 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 RELL2Q8NC24 303 aaPredicted RBP6.72□□□□□ -1.33
NUP88-205ENST00000572809 OR4C3Q8NH37 302 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 GOT1L1Q8NHS2 421 aaPredicted RBP6.72□□□□□ -1.33
NUP88-205ENST00000572809 FBXO30Q8TB52 745 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 ADAMTS15Q8TE58 950 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 FAM120BQ96EK7 910 aaKnown RBP6.72□□□□□ -1.33
NUP88-205ENST00000572809 CHMP6Q96FZ7 201 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 RMND5BQ96G75 393 aaPredicted RBP6.72□□□□□ -1.33
NUP88-205ENST00000572809 PPP1R36Q96LQ0 422 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 MS4A4EQ96PG1 132 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 PAIP2Q9BPZ3 127 aaKnown RBP6.72□□□□□ -1.33
NUP88-205ENST00000572809 ZNF559Q9BR84 538 aa6.72□□□□□ -1.33
NUP88-205ENST00000572809 DUSP26Q9BV47 211 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms