RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 AMZ1Q400G9 498 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 NKAIN2Q5VXU1 208 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 NXNL2Q5VZ03 156 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 NIPAL1Q6NVV3 410 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 ZNF613Q6PF04 617 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 ZNF554Q86TJ5 538 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 PARP16Q8N5Y8 322 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 RCBTB1Q8NDN9 531 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 OR6C4Q8NGE1 309 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 RFKQ969G6 155 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 PPP1R14BQ96C90 147 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 PTCHD1Q96NR3 888 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 CD180Q99467 661 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 ZNF559Q9BR84 538 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 ZNF649Q9BS31 505 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 SPRTNQ9H040 489 aaPredicted RBP18.74■□□□□ 0.59
CLN3-230ENST00000568076 UCKL1Q9NWZ5 548 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 CHCHD3Q9NX63 227 aaKnown RBP18.74■□□□□ 0.59
CLN3-230ENST00000568076 FBXL21Q9UKT6 434 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 YARS2Q9Y2Z4 477 aaKnown RBP18.74■□□□□ 0.59
CLN3-230ENST00000568076 PEX16Q9Y5Y5 336 aa18.74■□□□□ 0.59
CLN3-230ENST00000568076 PNMA8CA0A1B0GUJ8 204 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 FAM183AA6NL82 134 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 GUSBP08236 651 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 HTR1FP30939 366 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 S100A5P33763 92 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 SLC1A3P43003 542 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 THSD4Q6ZMP0 1018 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 LHFPL3Q86UP9 236 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 GRAMD2AQ8IUY3 354 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 CPOQ8IVL8 374 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 OR9Q1Q8NGQ5 310 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 TMEM203Q969S6 136 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 BPIFA2Q96DR5 249 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 DGAT2Q96PD7 388 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 NELL2Q99435 816 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 TMEM27Q9HBJ8 222 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 IRAK4Q9NWZ3 460 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 SOHLH2Q9NX45 425 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 EXOGQ9Y2C4 368 aaKnown RBP18.73■□□□□ 0.59
CLN3-230ENST00000568076 SF3B6Q9Y3B4 125 aaKnown RBP18.73■□□□□ 0.59
CLN3-230ENST00000568076 CLDN4O14493 209 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 CTDSP2O14595 271 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 PLD2O14939 933 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 UPK1BO75841 260 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 SOX30O94993 753 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 PPM1FP49593 454 aaPredicted RBP18.73■□□□□ 0.59
CLN3-230ENST00000568076 BCAP31P51572 246 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 NXPH1P58417 271 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 DNASE1L3Q13609 305 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 NNATQ16517 81 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 TMEM44Q2T9K0 475 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 GARNL3Q5VVW2 1013 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 OGFOD3Q6PK18 319 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 TMPRSS11FQ6ZWK6 438 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 OR13C2Q8NGS9 318 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 C1orf216Q8TAB5 229 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 HSPA12BQ96MM6 686 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 NUAK2Q9H093 628 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 POLE4Q9NR33 117 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 C14orf105Q9NVL8 296 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 TXNL4BQ9NX01 149 aaKnown RBP18.73■□□□□ 0.59
CLN3-230ENST00000568076 KLHL3Q9UH77 587 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 SSR3Q9UNL2 185 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 ERVK-19Q9WJR5 959 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 SIGLEC7Q9Y286 467 aa18.73■□□□□ 0.59
CLN3-230ENST00000568076 LAMA1P25391 3075 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 A0A075B6Q4 140 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 A0A1B0GWA3 101 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 BLACEA4D250 179 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 TLCD2A6NGC4 264 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 LMO7DNF2Z398 122 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 HYAL3O43820 417 aaPredicted RBP18.72■□□□□ 0.59
CLN3-230ENST00000568076 LALBAP00709 142 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 TSPAN19P0C672 248 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 CT45A8P0DMV1 189 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 CT45A9P0DMV2 189 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 PGDP52209 483 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 RPS25P62851 125 aaKnown RBP18.72■□□□□ 0.59
CLN3-230ENST00000568076 TPBGQ13641 420 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 CT45A2Q5DJT8 189 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 PLEKHG7Q6ZR37 379 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 CXXC5Q7LFL8 322 aaKnown RBP18.72■□□□□ 0.59
CLN3-230ENST00000568076 LAPTM4BQ86VI4 370 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 LYSMD2Q8IV50 215 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 OR51Q1Q8NH59 317 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 C16orf52Q8NHV5 167 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 ADAMTS18Q8TE60 1221 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 ARHGAP9Q9BRR9 750 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 PDE7BQ9NP56 450 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 ISYNA1Q9NPH2 558 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 MED31Q9Y3C7 131 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 PCDH15Q96QU1 1955 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 NPIPB9F8W1W9 429 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 STK25O00506 426 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 CHP2O43745 196 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 IGHA1P01876 353 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 NGFRP08138 427 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 ATXN8OSP0DMR3 200 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 CTBP2P56545 445 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms