RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 HPGDP15428 266 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 SHC1P29353 583 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 EIF1P41567 113 aaKnown RBP11.66□□□□□ -0.54
TPM1-220ENST00000559556 SERPINB4P48594 390 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 PRIM2P49643 509 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 PRKAG1P54619 331 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 MANFP55145 182 aaKnown RBP11.66□□□□□ -0.54
TPM1-220ENST00000559556 RPS4XP62701 263 aaKnown RBP11.66□□□□□ -0.54
TPM1-220ENST00000559556 RNPS1Q15287 305 aaKnown RBP11.66□□□□□ -0.54
TPM1-220ENST00000559556 CD226Q15762 336 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 CCDC153Q494R4 210 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 MTERF4Q7Z6M4 381 aaKnown RBP11.66□□□□□ -0.54
TPM1-220ENST00000559556 LILRA2Q8N149 483 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 COX18Q8N8Q8 333 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 OR2T11Q8NH01 316 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 LILRB1Q8NHL6 650 aaPredicted RBP11.66□□□□□ -0.54
TPM1-220ENST00000559556 SPATA3Q8NHX4 192 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 B4GALNT2Q8NHY0 566 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 ABHD3Q8WU67 409 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 OSTF1Q92882 214 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 FBXW5Q969U6 566 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 CPNE4Q96A23 557 aaPredicted RBP11.66□□□□□ -0.54
TPM1-220ENST00000559556 PPCDCQ96CD2 204 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 MTERF3Q96E29 417 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 TSSK3Q96PN8 268 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 TACO1Q9BSH4 297 aaKnown RBP11.66□□□□□ -0.54
TPM1-220ENST00000559556 BTBD2Q9BX70 525 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 HDHD5Q9BXW7 423 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 DUSP22Q9NRW4 184 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 OXSMQ9NWU1 459 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 KLHL13Q9P2N7 655 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 LAMP3Q9UQV4 416 aa11.66□□□□□ -0.54
TPM1-220ENST00000559556 RGS14O43566 566 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 AKAP10O43572 662 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 CRLF1O75462 422 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 THBS1P07996 1170 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 ALOX5P09917 674 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 DANCRP0C864 163 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 ADH6P28332 368 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 SFTPDP35247 375 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 CARD18P57730 90 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 POU6F2P78424 691 aaPredicted RBP11.65□□□□□ -0.54
TPM1-220ENST00000559556 ZNF117Q03924 483 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 FOXF1Q12946 379 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 MLC1Q15049 377 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 CLEC12BQ2HXU8 276 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 TMEM201Q5SNT2 666 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 NCMAPQ5T1S8 102 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 SFRP5Q5T4F7 317 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 SEZ6L2Q6UXD5 910 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 Q6ZSR9 355 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 ROBO4Q8WZ75 1007 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 FAM120BQ96EK7 910 aaKnown RBP11.65□□□□□ -0.54
TPM1-220ENST00000559556 C16orf58Q96GQ5 468 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 REXO5Q96IC2 774 aaKnown RBP11.65□□□□□ -0.54
TPM1-220ENST00000559556 STACQ99469 402 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 SRXN1Q9BYN0 137 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 ESRP2Q9H6T0 727 aaKnown RBP11.65□□□□□ -0.54
TPM1-220ENST00000559556 COQ10BQ9H8M1 238 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 NGBQ9NPG2 151 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 TIGARQ9NQ88 270 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 SIRT3Q9NTG7 399 aaPredicted RBP11.65□□□□□ -0.54
TPM1-220ENST00000559556 SH3BP4Q9P0V3 963 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 TMED5Q9Y3A6 229 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 ACTL7BQ9Y614 415 aa11.65□□□□□ -0.54
TPM1-220ENST00000559556 KIF2AO00139 706 aaPredicted RBP11.64□□□□□ -0.55
TPM1-220ENST00000559556 AZIN1O14977 448 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 LSM1O15116 133 aaKnown RBP11.64□□□□□ -0.55
TPM1-220ENST00000559556 EFNA2O43921 213 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 HMGN2P05204 90 aaKnown RBP11.64□□□□□ -0.55
TPM1-220ENST00000559556 CD3EP07766 207 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 SOD3P08294 240 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 FAM153BP0C7A2 387 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 CRHR1P34998 444 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 ASMTP46597 345 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 SUMO3P55854 103 aaPredicted RBP11.64□□□□□ -0.55
TPM1-220ENST00000559556 RPL38P63173 70 aaKnown RBP11.64□□□□□ -0.55
TPM1-220ENST00000559556 DMTNQ08495 405 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 VEZF1Q14119 521 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 TAB1Q15750 504 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 FAM153CQ494X1 144 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 RFTN2Q52LD8 501 aaPredicted RBP11.64□□□□□ -0.55
TPM1-220ENST00000559556 CCNJQ5T5M9 372 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 LIPMQ5VYY2 423 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 HEPHL1Q6MZM0 1159 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 NUFIP2Q7Z417 695 aaKnown RBP11.64□□□□□ -0.55
TPM1-220ENST00000559556 TDRPQ86YL5 185 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 IFT20Q8IY31 132 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 CLHC1Q8NHS4 586 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 JADE3Q92613 823 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 OTUB1Q96FW1 271 aaPredicted RBP11.64□□□□□ -0.55
TPM1-220ENST00000559556 TRMT61AQ96FX7 289 aaKnown RBP11.64□□□□□ -0.55
TPM1-220ENST00000559556 PIGUQ9H490 435 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 TUBB1Q9H4B7 451 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 GIN1Q9NXP7 522 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 BAIAP2L1Q9UHR4 511 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 ICAM5Q9UMF0 924 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 SNX8Q9Y5X2 465 aa11.64□□□□□ -0.55
TPM1-220ENST00000559556 GPC6Q9Y625 555 aaPredicted RBP11.64□□□□□ -0.55
TPM1-220ENST00000559556 GJE1A6NN92 205 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms