RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ZNF317Q96PQ6 595 aaPredicted RBP2.49□□□□□ -2.01
VPS13C-208ENST00000559119 CITED2Q99967 270 aaPredicted RBP2.49□□□□□ -2.01
VPS13C-208ENST00000559119 DESI2Q9BSY9 194 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 SPATA16Q9BXB7 569 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 KRT23Q9C075 422 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 NACA2Q9H009 215 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 RNPEPL1Q9HAU8 725 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 TMEM165Q9HC07 324 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 LZTFL1Q9NQ48 299 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 FAM114A2Q9NRY5 505 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 ZNF223Q9UK11 482 aaPredicted RBP2.49□□□□□ -2.01
VPS13C-208ENST00000559119 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.49□□□□□ -2.01
VPS13C-208ENST00000559119 PXDNLA1KZ92 1463 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 QRICH2Q9H0J4 1663 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 RIMS2Q9UQ26 1411 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 KIAA0556O60303 1618 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 MAP3K4Q9Y6R4 1608 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 RFX7Q2KHR2 1363 aa2.49□□□□□ -2.01
VPS13C-208ENST00000559119 DLC1Q96QB1 1528 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 MAGI1Q96QZ7 1491 aaPredicted RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 SMIM31A0A1B0GVY4 71 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 SIGLEC16A6NMB1 481 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 LSM1O15116 133 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 ST8SIA3O43173 380 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 CYTH3O43739 400 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 PFDN1O60925 122 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 NOL4O94818 638 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 TOXO94900 526 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 CPNE6O95741 557 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 PGK1P00558 417 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 OAS1P00973 400 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 PABPC4LP0CB38 370 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 TPBGLP0DKB5 382 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 EIF2S2P20042 333 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 TMOD1P28289 359 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 PCK1P35558 622 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 CYLC1P35663 651 aaPredicted RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 GP5P40197 560 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 SYKP43405 635 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 UCP2P55851 309 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 ARPC4P59998 168 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 SPAG1Q07617 926 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 CUL1Q13616 776 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 SPCS2Q15005 226 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 STK38Q15208 465 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 TRADDQ15628 312 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 CD226Q15762 336 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 HAGHQ16775 308 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 IMMTQ16891 758 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 GPR157Q5UAW9 335 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 RESP18Q5W5W9 173 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 THOC7Q6I9Y2 204 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 C16orf87Q6PH81 154 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 ADAMTSL5Q6ZMM2 481 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 HOOK3Q86VS8 718 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 PEX5LQ8IYB4 626 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 OR8H3Q8N146 312 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 RNF10Q8N5U6 811 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 DCAF4L2Q8NA75 395 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 SPATA4Q8NEY3 305 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 DQX1Q8TE96 717 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 DNAJC9Q8WXX5 260 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 TLCD1Q96CP7 247 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 CCDC43Q96MW1 224 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 XPO6Q96QU8 1125 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 SH3GL1Q99961 368 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 CENPKQ9BS16 269 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 TCHPQ9BT92 498 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 TMEM109Q9BVC6 243 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 NSRP1Q9H0G5 558 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 CARD9Q9H257 536 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 THAP9Q9H5L6 903 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 DCLRE1BQ9H816 532 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 ECT2Q9H8V3 914 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 SAMSN1Q9NSI8 373 aaKnown RBP2.48□□□□□ -2.01
VPS13C-208ENST00000559119 FAIMQ9NVQ4 179 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 CYP39A1Q9NYL5 469 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 SNX12Q9UMY4 172 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 PSG11Q9UQ72 335 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 HYOU1Q9Y4L1 999 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 FADS3Q9Y5Q0 445 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 ARHGAP21Q5T5U3 1957 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 VWDEQ8N2E2 1590 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 MED23Q9ULK4 1368 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 PLEKHG1Q9ULL1 1385 aa2.48□□□□□ -2.01
VPS13C-208ENST00000559119 PREX1Q8TCU6 1659 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 CD163L1Q9NR16 1453 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 MLH3Q9UHC1 1453 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 A0A0J9YVX5 310 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 ANKRD63C9JTQ0 380 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 H0Y626 953 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 CYB561D2O14569 222 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 JAK2O60674 1132 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 PEX11AO75192 247 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 PDE5AO76074 875 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 SIX3O95343 332 aaPredicted RBP2.47□□□□□ -2.01
VPS13C-208ENST00000559119 LCA5LO95447 670 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 CTDNEP1O95476 244 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 KRT14P02533 472 aa2.47□□□□□ -2.01
VPS13C-208ENST00000559119 GYPCP04921 128 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms