RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CNDP1Q96KN2 507 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 TCEANC2Q96MN5 208 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 TGM7Q96PF1 710 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 OR5B2Q96R09 309 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 RBM4BQ9BQ04 359 aaKnown RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 TMEM43Q9BTV4 400 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 TSSK1BQ9BXA7 367 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 CAPS2Q9BXY5 557 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 DUSP16Q9BY84 665 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 GCOM2Q9BZD3 368 aaPredicted RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 NXF5Q9H1B4 397 aaKnown RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 GLIPR2Q9H4G4 154 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 APMAPQ9HDC9 416 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 PNO1Q9NRX1 252 aaKnown RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 SMOXQ9NWM0 555 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 DCAF16Q9NXF7 216 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 IL36GQ9NZH8 169 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 PIPOXQ9P0Z9 390 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 ONECUT1Q9UBC0 465 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 EXTL2Q9UBQ6 330 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 CIDEBQ9UHD4 219 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 PCSK1NQ9UHG2 260 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 CRLS1Q9UJA2 301 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 ZNF221Q9UK13 617 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 HPCAL4Q9UM19 191 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 PDE10AQ9Y233 779 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 EIF3LQ9Y262 564 aaKnown RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 L3MBTL1Q9Y468 752 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 WDR45Q9Y484 360 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 OARD1Q9Y530 152 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 GMPPBQ9Y5P6 360 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 ALG6Q9Y672 507 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 SPACA6W5XKT8 324 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 USP6P35125 1406 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 LOC100131303A0A0U1RQF7 123 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 HSFX4A0A1B0GTS1 333 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 A0A1B0GU03 582 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 HSFX3A0A1B0GWH4 333 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 ARHGEF35A5YM69 484 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 BTBD17A6NE02 478 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 ZNF705EA8MWA4 302 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 A8MX80 341 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 UBXN8O00124 270 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 KIF2AO00139 706 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 SLC17A2O00624 439 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 OR7A17O14581 309 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 MSH4O15457 936 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 NUDT21O43809 227 aaKnown RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 RAMP1O60894 148 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 B4GALT2O60909 372 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 SH3BGRLO75368 114 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 ZNF254O75437 659 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 KBTBD11O94819 623 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 LRATO95237 230 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 TBX6O95947 436 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 CD55P08174 381 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 HBQ1P09105 142 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CT45A10P0DMU9 189 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 BCKDHAP12694 445 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 ZNF44P15621 663 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 H2AFXP16104 143 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 ACADSP16219 412 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 PGCP20142 388 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CYP2B6P20813 491 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CALB2P22676 271 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 IGHV1-2P23083 117 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 GATA2P23769 480 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 HMGB2P26583 209 aaKnown RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 SHC1P29353 583 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CDH5P33151 784 aaPredicted RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 ELK3P41970 407 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 GRIA1P42261 906 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 MAGEA8P43361 318 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 XCR1P46094 333 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 SULT1E1P49888 294 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 EMDP50402 254 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 RIPK4P57078 832 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 RND3P61587 244 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CXCL6P80162 114 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 VLDLRP98155 873 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 RAB40BQ12829 278 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 DDX39BQ13838 428 aaKnown RBP1.26□□□□□ -2.21
USP3-209ENST00000558925 CYP51A1Q16850 503 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 TATDN3Q17R31 274 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 MICAQ29983 383 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 SLC25A52Q3SY17 297 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 KRTAP13-3Q3SY46 172 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 CFAP221Q4G0U5 840 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 KCTD21Q4G0X4 260 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 TEX44Q53QW1 395 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 TCTEX1D4Q5JR98 221 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 PHYHD1Q5SRE7 291 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 SPATA46Q5T0L3 261 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 PDZK1Q5T2W1 519 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 TPGS2Q68CL5 300 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 ATL3Q6DD88 541 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 OR8G2PQ6IF36 304 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 FAM71F2Q6NXP2 309 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 GCNT7Q6ZNI0 430 aa1.26□□□□□ -2.21
USP3-209ENST00000558925 TMUB2Q71RG4 321 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms