RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 ATAD3BQ5T9A4 648 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 ZNF619Q8N2I2 560 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 NAXEQ8NCW5 288 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 B4GALNT2Q8NHY0 566 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 PHF10Q8WUB8 498 aaKnown RBP11.17□□□□□ -0.62
SYNE2-214ENST00000554928 MAL2Q969L2 176 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 TUBA1CQ9BQE3 449 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 CPPED1Q9BRF8 314 aaPredicted RBP11.17□□□□□ -0.62
SYNE2-214ENST00000554928 TTYH2Q9BSA4 534 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 RSPO3Q9BXY4 272 aaPredicted RBP11.17□□□□□ -0.62
SYNE2-214ENST00000554928 HOXD1Q9GZZ0 328 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 KLHL14Q9P2G3 628 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 ICAM5Q9UMF0 924 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 TRIM33Q9UPN9 1127 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 RNF6Q9Y252 685 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 MRPS18CQ9Y3D5 142 aaKnown RBP11.17□□□□□ -0.62
SYNE2-214ENST00000554928 L3MBTL1Q9Y468 752 aa11.17□□□□□ -0.62
SYNE2-214ENST00000554928 A0A0G2JNJ9 132 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 FIGNL2A6NMB9 653 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 H3BML4 177 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 EFNA2O43921 213 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 WDR1O75083 606 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 ACTL6AO96019 429 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 BCHEP06276 602 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 TFPTP0C1Z6 253 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 LINGO3P0C6S8 592 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 NR2F1P10589 423 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 ZNF708P17019 499 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 DRD4P21917 467 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 PSMA4P25789 261 aaKnown RBP11.16□□□□□ -0.62
SYNE2-214ENST00000554928 PER3P56645 1201 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 CLDN20P56880 219 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 FOXF1Q12946 379 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 KLF10Q13118 480 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 SKP2Q13309 424 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 PLPPR5Q32ZL2 321 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 METTL21CQ5VZV1 264 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 AP1ARQ63HQ0 302 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 B3GNT6Q6ZMB0 384 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 LIX1LQ8IVB5 337 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 SLC38A5Q8WUX1 472 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 SMPDL3BQ92485 455 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 SDCCAG3Q96C92 435 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 TMEM19Q96HH6 336 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 TRNT1Q96Q11 434 aaKnown RBP11.16□□□□□ -0.62
SYNE2-214ENST00000554928 PTGES2Q9H7Z7 377 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 TMEM45AQ9NWC5 275 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 ARMCX1Q9P291 453 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 PLEKHB1Q9UF11 243 aaPredicted RBP11.16□□□□□ -0.62
SYNE2-214ENST00000554928 Q9UFV3 132 aa11.16□□□□□ -0.62
SYNE2-214ENST00000554928 NCOA6Q14686 2063 aaPredicted RBP11.16□□□□□ -0.62
SYNE2-214ENST00000554928 PCNX1Q96RV3 2341 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 FLNBO75369 2602 aaKnown RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 C19orf84I3L1E1 186 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 GTPBP1O00178 669 aaKnown RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 SEC14L5O43304 696 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 CYP7B1O75881 506 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 SOX30O94993 753 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 AGR2O95994 175 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 GUSBP08236 651 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 SNRPB2P08579 225 aaKnown RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 UBTFL6P0CB48 400 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 UBL4AP11441 157 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 CPN1P15169 458 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 RPS4Y1P22090 263 aaKnown RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 CHMP24386 653 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 SHC1P29353 583 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 LSP1P33241 339 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 PGM1P36871 562 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 CAPRIN1Q14444 709 aaKnown RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 FGFBP1Q14512 234 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 GANABQ14697 944 aaKnown RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 ZNF630Q2M218 657 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 RUNDC3AQ59EK9 446 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 LRRC74BQ6ZQY2 392 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 MTERF4Q7Z6M4 381 aaKnown RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 DHDDSQ86SQ9 333 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 VRK2Q86Y07 508 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 MISPQ8IVT2 679 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 UBQLNLQ8IYU4 475 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 ZNF808Q8N4W9 903 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 C9orf106Q8NAJ2 232 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 ZNF527Q8NB42 609 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 FAM71CQ8NEG0 241 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 TNIP2Q8NFZ5 429 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 GPR119Q8TDV5 335 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 CNOT9Q92600 299 aaKnown RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 RNF145Q96MT1 663 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 TRIB1Q96RU8 372 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 ELAC2Q9BQ52 826 aaKnown RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 SLC39A3Q9BRY0 314 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 UCK2Q9BZX2 261 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 FAM107BQ9H098 131 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 TMEM185BQ9H7F4 350 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 LEF1Q9UJU2 399 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-214ENST00000554928 NDUFAF1Q9Y375 327 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 CHST2Q9Y4C5 530 aa11.15□□□□□ -0.62
SYNE2-214ENST00000554928 DSPPQ9NZW4 1301 aa11.14□□□□□ -0.63
SYNE2-214ENST00000554928 AGAP5A6NIR3 686 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms