RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 RBCK1Q9BYM8 510 aa12.75□□□□□ -0.37
RTN3-210ENST00000540798 MRPS17Q9Y2R5 130 aaKnown RBP12.75□□□□□ -0.37
RTN3-210ENST00000540798 A0A0B4J2E0 115 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 A0A1B0GX12 115 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 H3BMH7 237 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 HRKO00198 91 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 BHLHE40O14503 412 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 AQP9O43315 295 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 ZNF749O43361 778 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 HMGN1P05114 100 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 OCM2P0CE71 109 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 OCMP0CE72 109 aaPredicted RBP12.74□□□□□ -0.37
RTN3-210ENST00000540798 LIMS3P0CW19 117 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 LIMS4P0CW20 117 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 EPHA4P54764 986 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 FUT7Q11130 342 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 SLC13A2Q13183 592 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 NXNL2Q5VZ03 156 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 MED25Q71SY5 747 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 MINDY2Q8NBR6 621 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 PFN4Q8NHR9 129 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 SAMD8Q96LT4 415 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 UBQLN3Q9H347 655 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 PRTFDC1Q9NRG1 225 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 C20orf141Q9NUB4 165 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 SIDT1Q9NXL6 827 aaKnown RBP12.74□□□□□ -0.37
RTN3-210ENST00000540798 DNAJB12Q9NXW2 375 aaKnown RBP12.74□□□□□ -0.37
RTN3-210ENST00000540798 CBLCQ9ULV8 474 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 DTX4Q9Y2E6 619 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 PCDH15Q96QU1 1955 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 PRUNE2Q8WUY3 3088 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 A0A075B6Q4 140 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 IGHV5-51A0A0C4DH38 117 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 J3QRE1 110 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 KPNA4O00629 521 aaPredicted RBP12.74□□□□□ -0.37
RTN3-210ENST00000540798 IGHA1P01876 353 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 CLPSP04118 112 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 HTR1FP30939 366 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 ACAA2P42765 397 aaKnown RBP12.74□□□□□ -0.37
RTN3-210ENST00000540798 MAT1AQ00266 395 aaKnown RBP12.74□□□□□ -0.37
RTN3-210ENST00000540798 CNOT9Q92600 299 aaKnown RBP12.74□□□□□ -0.37
RTN3-210ENST00000540798 TEX12Q9BXU0 123 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 CARD8Q9Y2G2 431 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 TMEM184BQ9Y519 407 aaPredicted RBP12.74□□□□□ -0.37
RTN3-210ENST00000540798 NUP210LQ5VU65 1888 aa12.74□□□□□ -0.37
RTN3-210ENST00000540798 COL5A1P20908 1838 aaPredicted RBP12.74□□□□□ -0.37
RTN3-210ENST00000540798 ZNF670-ZNF695F2Z2N8 137 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 TCEA1P23193 301 aaKnown RBP12.73□□□□□ -0.37
RTN3-210ENST00000540798 PSMA1P25786 263 aaKnown RBP12.73□□□□□ -0.37
RTN3-210ENST00000540798 MAOBP27338 520 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 SSTR4P31391 388 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 GFERP55789 205 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 HSD17B7P56937 341 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 TPBGQ13641 420 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 ATP1A4Q13733 1029 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 ZNHIT3Q15649 155 aaPredicted RBP12.73□□□□□ -0.37
RTN3-210ENST00000540798 AMZ1Q400G9 498 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 TCTE1Q5JU00 501 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 PDZK1Q5T2W1 519 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 LSMEM1Q8N8F7 131 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 OR4N2Q8NGD1 307 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 TM9SF4Q92544 642 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 HS6ST2Q96MM7 605 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 DPH1Q9BZG8 443 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 OR52D1Q9H346 318 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 FLRT3Q9NZU0 649 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 TMEM5Q9Y2B1 443 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 SF3B6Q9Y3B4 125 aaKnown RBP12.73□□□□□ -0.37
RTN3-210ENST00000540798 PEX16Q9Y5Y5 336 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 FUOMA2VDF0 154 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 H0YIG0 161 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 CHP2O43745 196 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 PRAMEF2O60811 474 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 ADAM11O75078 769 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 MYL12AP19105 171 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 TGM1P22735 817 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 MLLT3P42568 568 aaPredicted RBP12.73□□□□□ -0.37
RTN3-210ENST00000540798 CDH11P55287 796 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 BTG2P78543 158 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 STX4Q12846 297 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 FGFBP1Q14512 234 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 UBXN2BQ14CS0 331 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 ZSWIM7Q19AV6 140 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 C14orf28Q4W4Y0 310 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 RPL13AP3Q6NVV1 102 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 LINC00114Q6XXX2 140 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 RBM18Q96H35 190 aaKnown RBP12.73□□□□□ -0.37
RTN3-210ENST00000540798 FOXQ1Q9C009 403 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 FN3KQ9H479 309 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 SOX6P35712 828 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 GCGRP47871 477 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 HNRNPKP61978 463 aaKnown RBP eCLIP12.73□□□□□ -0.37
RTN3-210ENST00000540798 ZNF45Q02386 682 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 ACSM1Q08AH1 577 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 LNX2Q8N448 690 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 ZNF615Q8N8J6 731 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 ZSCAN1Q8NBB4 408 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 FANK1Q8TC84 345 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 NACC2Q96BF6 587 aa12.73□□□□□ -0.37
RTN3-210ENST00000540798 DGAT2Q96PD7 388 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms