RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	EIF1AY	O14602	144 aa	Known RBP	11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	CASK	O14936	926 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ITM2A	O43736	263 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	EFNA2	O43921	213 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SCN2B	O60939	215 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	C6orf47	O95873	294 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	POU2F1	P14859	743 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	HPGD	P15428	266 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	LOX	P28300	417 aa	Predicted RBP	11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ELK4	P28324	431 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	CPOX	P36551	454 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	EIF1AX	P47813	144 aa	Known RBP	11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ATP12A	P54707	1039 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SUMO3	P55854	103 aa	Predicted RBP	11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	HBA1	P69905	142 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ZNF117	Q03924	483 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ZNF844	Q08AG5	666 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SGCB	Q16585	318 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	KRTAP21-3	Q3LHN1	58 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SLC25A53	Q5H9E4	307 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	C22orf34	Q6ZV56	151 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SZRD1	Q7Z422	152 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	CXorf67	Q86X51	503 aa	Predicted RBP	11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	KRTAP1-3	Q8IUG1	177 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	OR2V1	Q8NHB1	315 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ADAMTS15	Q8TE58	950 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	TUBGCP3	Q96CW5	907 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ARSG	Q96EG1	525 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	OTUB1	Q96FW1	271 aa	Predicted RBP	11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	RNF145	Q96MT1	663 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SDF2	Q99470	211 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	PIP5K1A	Q99755	562 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	C20orf27	Q9GZN8	174 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	BEX4	Q9NWD9	120 aa	Predicted RBP	11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ZNF226	Q9NYT6	803 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	NOP53	Q9NZM5	478 aa	Known RBP	11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	RAB21	Q9UL25	225 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	PROCR	Q9UNN8	238 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	RAP2C	Q9Y3L5	183 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SNX8	Q9Y5X2	465 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	KCNE3	Q9Y6H6	103 aa		11.74	□□□□□ -0.53
SEMA4D-223	ENST00000540475	DUXA	A6NLW8	204 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ESPN	B1AK53	854 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	RNASET2	O00584	256 aa	Known RBP	11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ANKRD28	O15084	1053 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	TM9SF1	O15321	606 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	GMFG	O60234	142 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SKAP2	O75563	359 aa	Predicted RBP	11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SERPINE1	P05121	402 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	P2RX1	P51575	399 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ZNF41	P51814	821 aa	Predicted RBP	11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ABCE1	P61221	599 aa	Known RBP	11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SIRPA	P78324	504 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	FOXD4	Q12950	439 aa	Predicted RBP	11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	KEAP1	Q14145	624 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	DCST2	Q5T1A1	773 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	PRR14L	Q5THK1	2151 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	FBXW10	Q5XX13	1052 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	BHLHB9	Q6PI77	547 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	CBLN3	Q6UW01	205 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	LILRA2	Q8N149	483 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ZNF781	Q8N8C0	355 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	GATS	Q8NAP1	163 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ZNF527	Q8NB42	609 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	MIPOL1	Q8TD10	442 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	GPR119	Q8TDV5	335 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SH3YL1	Q96HL8	342 aa	Predicted RBP	11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	OR7D2	Q96RA2	312 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SORT1	Q99523	831 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	PARD6B	Q9BYG5	372 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	NMUR2	Q9GZQ4	415 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	OR10A4	Q9H209	315 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	SERHL2	Q9H4I8	314 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ZNF395	Q9H8N7	513 aa	Predicted RBP	11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	AKTIP	Q9H8T0	292 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	GP6	Q9HCN6	339 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	MCTS1	Q9ULC4	181 aa	Known RBP	11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	FAF1	Q9UNN5	650 aa	Predicted RBP	11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	DTNA	Q9Y4J8	743 aa		11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	GPC6	Q9Y625	555 aa	Predicted RBP	11.73	□□□□□ -0.53
SEMA4D-223	ENST00000540475	TNFSF11	O14788	317 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	OIP5	O43482	229 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	CXCL13	O43927	109 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ZNF500	O60304	480 aa	Predicted RBP	11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	EIF4E2	O60573	245 aa	Known RBP	11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	MYZAP	P0CAP1	466 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	PPP3CB	P16298	524 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ATP6V1C1	P21283	382 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	TP53BP2	Q13625	1128 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	MPP2	Q14168	576 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	POU4F3	Q15319	338 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ZNF141	Q15928	474 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	ARHGAP11B	Q3KRB8	267 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	PDSS1	Q5T2R2	415 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	GTF2IRD2B	Q6EKJ0	949 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	HEPHL1	Q6MZM0	1159 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	C6orf120	Q7Z4R8	191 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	GTF2IRD2	Q86UP8	949 aa		11.72	□□□□□ -0.53
SEMA4D-223	ENST00000540475	KIRREL3	Q8IZU9	778 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms