RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	CHIT1	Q13231	466 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	LAGE3	Q14657	143 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	SLC5A12	Q1EHB4	618 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	RNLS	Q5VYX0	342 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	FAHD2B	Q6P2I3	314 aa	Predicted RBP	4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	C16orf62	Q7Z3J2	963 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	TMEM110	Q86TL2	294 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	LCA5	Q86VQ0	697 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	C9orf40	Q8IXQ3	194 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	STEAP2	Q8NFT2	490 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	OR51G2	Q8NGK0	314 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	SLC5A11	Q8WWX8	675 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	FAM3C	Q92520	227 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	FAHD2A	Q96GK7	314 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	SH3YL1	Q96HL8	342 aa	Predicted RBP	4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	NT5C3A	Q9H0P0	336 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	RAB18	Q9NP72	206 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	C6orf203	Q9P0P8	240 aa	Predicted RBP	4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	RPH3AL	Q9UNE2	315 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	KDR	P35968	1356 aa		4.14	□□□□□ -1.75
PRKDC-208	ENST00000536710	PCNX3	Q9H6A9	2034 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	FRG2C	A6NGY1	282 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710		G3V4G9	280 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	SCRG1	O75711	98 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	GDF1	P27539	372 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	RPL32	P62910	135 aa	Known RBP	4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	CSTF1	Q05048	431 aa	Known RBP	4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	KRTAP1-1	Q07627	177 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	RIPPLY1	Q0D2K3	151 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	RAB40B	Q12829	278 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	CUL1	Q13616	776 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	DPYSL3	Q14195	570 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710		Q1RN00	199 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	MAJIN	Q3KP22	176 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	ATAD3C	Q5T2N8	411 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	SLC22A10	Q63ZE4	541 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	UFSP1	Q6NVU6	142 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	SYT10	Q6XYQ8	523 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	MOB3B	Q86TA1	216 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	SERPINA9	Q86WD7	417 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	UBQLNL	Q8IYU4	475 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	TMEM123	Q8N131	208 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	SLC39A11	Q8N1S5	342 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	CADM2	Q8N3J6	435 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	OR5L2	Q8NGL0	311 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	TYMSOS	Q8TAI1	123 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	MS4A14	Q96JA4	679 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	AMDHD1	Q96NU7	426 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	CCT7	Q99832	543 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	PPDPF	Q9H3Y8	114 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	NANS	Q9NR45	359 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	SLC17A5	Q9NRA2	495 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	ZNF221	Q9UK13	617 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	PTBP2	Q9UKA9	531 aa	Known RBP	4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	CLEC4A	Q9UMR7	237 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	SAMD4A	Q9UPU9	718 aa	Known RBP	4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	NAALAD2	Q9Y3Q0	740 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710	FRMPD4	Q14CM0	1322 aa		4.13	□□□□□ -1.75
PRKDC-208	ENST00000536710		A0A1W2PNV4	684 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	NPIPA7	E9PJI5	369 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	OR7A17	O14581	309 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	ARPC3	O15145	178 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	THY1	P04216	161 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	H2BFM	P0C1H6	154 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	NPIPA8	P0DM63	369 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	ZNF44	P15621	663 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	EPHX2	P34913	555 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	MESD	Q14696	234 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	SLC1A5	Q15758	541 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	GSG1	Q2KHT4	349 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	CENPP	Q6IPU0	288 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	FAM71F2	Q6NXP2	309 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	CCDC80	Q76M96	950 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	HPS6	Q86YV9	775 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	GPR65	Q8IYL9	337 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	C15orf54	Q8N8G6	183 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	KLHL30-AS1	Q8NEE0	82 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	GTSF1	Q8WW33	167 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	ARNTL2	Q8WYA1	636 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	C7orf34	Q96L11	122 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	CAB39L	Q9H9S4	337 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	PCSK1N	Q9UHG2	260 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	NPIPA1	Q9UND3	350 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	MAB21L2	Q9Y586	359 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	POGZ	Q7Z3K3	1410 aa		4.12	□□□□□ -1.75
PRKDC-208	ENST00000536710	IGKV3D-20	A0A0C4DH25	116 aa		4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	FAM220BP	B1ANY3	271 aa		4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	BTN3A3	O00478	584 aa		4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	ZNF208	O43345	1280 aa		4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	ZNF254	O75437	659 aa		4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	GPX5	O75715	221 aa		4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	LAP3	P28838	519 aa		4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	ADORA2B	P29275	332 aa		4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	RPL29	P47914	159 aa	Known RBP	4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	UBE2H	P62256	183 aa		4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	MAP2K1	Q02750	393 aa	Predicted RBP	4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	FGL1	Q08830	312 aa		4.11	□□□□□ -1.75
PRKDC-208	ENST00000536710	PDK3	Q15120	406 aa		4.11	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms