RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CALHM2Q9HA72 323 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 TPT1P8Q9HAU6 139 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 MED17Q9NVC6 651 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 ALKBH4Q9NXW9 302 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 Q9UFV3 132 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 LIPT1Q9Y234 373 aa11.73□□□□□ -0.53
VPS28-216ENST00000533806 FREM3P0C091 2139 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 ITPR2Q14571 2701 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 A0A1W2PP18 115 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 MBD3L4A6NDZ8 208 aaPredicted RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 MBD3L3A6NE82 208 aaPredicted RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 MBD3L5A6NJ08 208 aaPredicted RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 CYSRT1A8MQ03 144 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 EIF4E2O60573 245 aaKnown RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 TNFRSF21O75509 655 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 H6PDO95479 791 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 CHRM4P08173 479 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 TFPTP0C1Z6 253 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 BMP2P12643 396 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 ETFAP13804 333 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 ZNF17P17021 662 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 NCF2P19878 526 aaPredicted RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 GRNP28799 593 aaKnown RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 GCKP35557 465 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 P2RX1P51575 399 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 SUCLG1P53597 346 aaKnown RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 SUMO3P55854 103 aaPredicted RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 CHRNEQ04844 493 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 SKP2Q13309 424 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 ATAD3BQ5T9A4 648 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 DLEU7Q6UYE1 221 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 DNAJC14Q6Y2X3 702 aaPredicted RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 LACC1Q8IV20 430 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 CCDC71Q8IV32 467 aaPredicted RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 LIX1LQ8IVB5 337 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 NAXEQ8NCW5 288 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 FAM71CQ8NEG0 241 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 TNIP2Q8NFZ5 429 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 OR5M1Q8NGP8 315 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 MBD3L2Q8NHZ7 208 aaPredicted RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 PNPT1Q8TCS8 783 aaKnown RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 PHOSPHO1Q8TCT1 267 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 GPR119Q8TDV5 335 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 TSPEARQ8WU66 669 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 ASB5Q8WWX0 329 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 PMM1Q92871 262 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 SDCCAG3Q96C92 435 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 ARSGQ96EG1 525 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 SH3YL1Q96HL8 342 aaPredicted RBP11.72□□□□□ -0.53
VPS28-216ENST00000533806 PIGQQ9BRB3 760 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 TMEM120AQ9BXJ8 343 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 RUBCNLQ9H714 662 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 COQ3Q9NZJ6 369 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 TRIM33Q9UPN9 1127 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 CAMK2AQ9UQM7 478 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 CARD8Q9Y2G2 431 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 L3MBTL1Q9Y468 752 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 WDR45Q9Y484 360 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 MAST4O15021 2626 aa11.72□□□□□ -0.53
VPS28-216ENST00000533806 DCHS2Q6V1P9 2916 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 DSPPQ9NZW4 1301 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 AGAP5A6NIR3 686 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 SHISA8B8ZZ34 492 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 H0YC42 278 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 H3BNH8 94 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 NR5A2O00482 541 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 HCRTR2O43614 444 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 EFNA2O43921 213 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 GMFGO60234 142 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 BCAS1O75363 584 aaPredicted RBP11.71□□□□□ -0.53
VPS28-216ENST00000533806 NTN1O95631 604 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 VIMP08670 466 aaKnown RBP11.71□□□□□ -0.53
VPS28-216ENST00000533806 PEPDP12955 493 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 RPS4Y1P22090 263 aaKnown RBP11.71□□□□□ -0.53
VPS28-216ENST00000533806 TCEA1P23193 301 aaKnown RBP11.71□□□□□ -0.53
VPS28-216ENST00000533806 HTR1EP28566 365 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 PGM1P36871 562 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 RNF144AP50876 292 aaPredicted RBP11.71□□□□□ -0.53
VPS28-216ENST00000533806 ANXA11P50995 505 aaKnown RBP11.71□□□□□ -0.53
VPS28-216ENST00000533806 TPD52P55327 224 aaPredicted RBP11.71□□□□□ -0.53
VPS28-216ENST00000533806 TFF3Q07654 80 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 FGFBP1Q14512 234 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 SF3B4Q15427 424 aaKnown RBP eCLIP11.71□□□□□ -0.536e-8■■■■■ 27
VPS28-216ENST00000533806 RGNQ15493 299 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 TOMM34Q15785 309 aaPredicted RBP11.71□□□□□ -0.53
VPS28-216ENST00000533806 NDUFAF6Q330K2 333 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 SLC25A53Q5H9E4 307 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 C6orf10Q5SRN2 563 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 RAET1LQ5VY80 246 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 SP5Q6BEB4 398 aaPredicted RBP11.71□□□□□ -0.53
VPS28-216ENST00000533806 LRRC74BQ6ZQY2 392 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 GGNQ86UU5 652 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 RETREG3Q86VR2 466 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 ZNF619Q8N2I2 560 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 OR5W2Q8NH69 310 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 ZBTB8AQ96BR9 441 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 TREX2Q9BQ50 279 aaPredicted RBP11.71□□□□□ -0.53
VPS28-216ENST00000533806 LAT2Q9GZY6 243 aa11.71□□□□□ -0.53
VPS28-216ENST00000533806 MTHFD2LQ9H903 347 aaPredicted RBP11.71□□□□□ -0.53
VPS28-216ENST00000533806 VAPAQ9P0L0 249 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms