RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 NR0B1P51843 470 aaKnown RBP19.51■□□□□ 0.71
VPS28-212ENST00000530836 PNLIPRP2P54317 469 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 FOXL2P58012 376 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 SLC26A5P58743 744 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 TRAM2Q15035 370 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 KRT80Q6KB66 452 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 ZNF550Q7Z398 422 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 ZNF440Q8IYI8 595 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 MGAT4BQ9UQ53 548 aa19.51■□□□□ 0.71
VPS28-212ENST00000530836 ZZEF1O43149 2961 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 MAGEA13PA6NCF6 341 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 SERINC4A6NH21 518 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 CLDN24A6NM45 220 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 SLC16A6O15403 523 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 UMODP07911 640 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 ENDOUP21128 410 aaKnown RBP19.5■□□□□ 0.71
VPS28-212ENST00000530836 ZNF136P52737 540 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 KCNAB2Q13303 367 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 IL18R1Q13478 541 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 ZIK1Q3SY52 487 aaPredicted RBP19.5■□□□□ 0.71
VPS28-212ENST00000530836 KLHL26Q53HC5 615 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 ENTPD8Q5MY95 495 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 PLEKHM3Q6ZWE6 761 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 USP51Q70EK9 711 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 SLC5A8Q8N695 610 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 ZNF614Q8N883 585 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 SLC38A4Q969I6 547 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 NACC2Q96BF6 587 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 EFHD2Q96C19 240 aaPredicted RBP19.5■□□□□ 0.71
VPS28-212ENST00000530836 ZNF559Q9BR84 538 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 FUZQ9BT04 418 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 ZNF700Q9H0M5 742 aa19.5■□□□□ 0.71
VPS28-212ENST00000530836 PAPOLBQ9NRJ5 636 aaKnown RBP19.5■□□□□ 0.71
VPS28-212ENST00000530836 CFAP47Q6ZTR5 3102 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 NINQ8N4C6 2090 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 TRBV4-1A0A0J9YWV2 114 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 A0A1W2PQ72 361 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 SCDO00767 359 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 FRS3O43559 492 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 ABCB7O75027 752 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 CYP7B1O75881 506 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 ZFAND5O76080 213 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 ADAP00813 363 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 NGFRP08138 427 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 WT1P19544 449 aaPredicted RBP19.49■□□□□ 0.71
VPS28-212ENST00000530836 TBXA2RP21731 343 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 IFNGR2P38484 337 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 CHN2P52757 468 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 UCNP55089 124 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 PLCXD2Q0VAA5 305 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 EXT1Q16394 746 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 OR4C3Q8NH37 302 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 SLC7A13Q8TCU3 470 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 ADAMTS16Q8TE57 1224 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 MBOAT4Q96T53 435 aa19.49■□□□□ 0.71
VPS28-212ENST00000530836 RYDENQ9NUL5 291 aaKnown RBP19.49■□□□□ 0.71
VPS28-212ENST00000530836 MRPS18BQ9Y676 258 aaKnown RBP19.49■□□□□ 0.71
VPS28-212ENST00000530836 SH3PXD2BA1X283 911 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 H3BNH8 94 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 TPST2O60704 377 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 REM1O75628 298 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 SEC24DO94855 1032 aaPredicted RBP19.48■□□□□ 0.71
VPS28-212ENST00000530836 CBLP22681 906 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 MMP11P24347 488 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 ST3GAL2Q16842 350 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 ZNF770Q6IQ21 691 aaPredicted RBP19.48■□□□□ 0.71
VPS28-212ENST00000530836 UGT2A3Q6UWM9 527 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 CCDC81Q6ZN84 652 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 PARP8Q8N3A8 854 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 GABARAPL3Q9BY60 117 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 PNPLA3Q9NST1 481 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 MAN2C1Q9NTJ4 1040 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 DNAJB12Q9NXW2 375 aaKnown RBP19.48■□□□□ 0.71
VPS28-212ENST00000530836 ZNF223Q9UK11 482 aaPredicted RBP19.48■□□□□ 0.71
VPS28-212ENST00000530836 TCFL5Q9UL49 500 aa19.48■□□□□ 0.71
VPS28-212ENST00000530836 MAP1BP46821 2468 aaKnown RBP19.48■□□□□ 0.71
VPS28-212ENST00000530836 LOC100130705A0A1B0GUX0 176 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 TRAPPC13A5PLN9 417 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 CPSF4LA6NMK7 179 aaKnown RBP19.47■□□□□ 0.71
VPS28-212ENST00000530836 OR10H3O60404 316 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 TSPAN2O60636 221 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 UTS2O95399 124 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 CSTAP01040 98 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 NAGAP17050 411 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 ABCD3P28288 659 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 PCOLCEQ15113 449 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 PODNL1Q6PEZ8 512 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 ZNF613Q6PF04 617 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 AQP11Q8NBQ7 271 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 C8orf44Q96CB5 159 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 OMA1Q96E52 524 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 SLC41A3Q96GZ6 507 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 ADOQ96SZ5 270 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 DGCR6LQ9BY27 220 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 GRIP2Q9C0E4 1043 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 TMEM27Q9HBJ8 222 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 UBAP1Q9NZ09 502 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 IGHV1-45A0A0A0MS14 117 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 TRBV11-1A0A0K0K1C0 115 aa19.47■□□□□ 0.71
VPS28-212ENST00000530836 A0A1W2PQD3 144 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms