RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 BEST3Q8N1M1 668 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 OR5K2Q8NHB8 316 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 ZDHHC1Q8WTX9 485 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 FOXN4Q96NZ1 517 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 PELOQ9BRX2 385 aaKnown RBP11.89□□□□□ -0.51
USP53-209ENST00000514665 PDFQ9HBH1 243 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 HSFX1Q9UBD0 423 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 CLEC2DQ9UHP7 191 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 C14orf166Q9Y224 244 aaKnown RBP11.89□□□□□ -0.51
USP53-209ENST00000514665 AP1M2Q9Y6Q5 423 aa11.89□□□□□ -0.51
USP53-209ENST00000514665 MEIS3P1A6NDR6 274 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 SLC9B1P1A6NJY1 282 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 EEF1E1-BLOC1S5C9J1V9 151 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 H3BQ06 376 aaPredicted RBP11.88□□□□□ -0.51
USP53-209ENST00000514665 CACNG3O60359 315 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 PRAMEF2O60811 474 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 ZNF806P0C7X5 589 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 HOXD12P35452 270 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 KIR2DS3Q14952 304 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 GPR19Q15760 415 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 SMAD2Q15796 467 aaKnown RBP11.88□□□□□ -0.51
USP53-209ENST00000514665 Q6ZNX1 250 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 MAMDC2Q7Z304 686 aaPredicted RBP11.88□□□□□ -0.51
USP53-209ENST00000514665 OR52R1Q8NGF1 315 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 OR13C2Q8NGS9 318 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 PARPBPQ9NWS1 579 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 PPP4R1LQ9P1A2 415 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 BOLA1Q9Y3E2 137 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 BCORQ6W2J9 1755 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 C17orf113A0A1B0GUU1 675 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 A8MVJ9 347 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 SLCO2B1O94956 709 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 APBB3O95704 486 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 ACP2P11117 423 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 RBMXP38159 391 aaKnown RBP11.88□□□□□ -0.51
USP53-209ENST00000514665 KCNJ10P78508 379 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 OCLNQ16625 522 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 COL28A1Q2UY09 1125 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 FAM78AQ5JUQ0 283 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 SYT6Q5T7P8 510 aaPredicted RBP11.88□□□□□ -0.51
USP53-209ENST00000514665 SLC35F2Q8IXU6 374 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 OR9A4Q8NGU2 314 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 ELMOD3Q96FG2 381 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 CLCC1Q96S66 551 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 PITX2Q99697 317 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 ASB6Q9NWX5 421 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 ABI3Q9P2A4 366 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 FBXO9Q9UK97 447 aaPredicted RBP11.88□□□□□ -0.51
USP53-209ENST00000514665 YARS2Q9Y2Z4 477 aaKnown RBP11.88□□□□□ -0.51
USP53-209ENST00000514665 H3BML4 177 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 K7ESM1 405 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 ARPC5O15511 151 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 IL1AP01583 271 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 CLUP10909 449 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 GIFP27352 417 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 TSPAN31Q12999 210 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 MRPL2Q5T653 305 aaKnown RBP11.88□□□□□ -0.51
USP53-209ENST00000514665 KDM4DQ6B0I6 523 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 ZNF440Q8IYI8 595 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 UBQLNLQ8IYU4 475 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 MR1Q95460 341 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 MS4A8Q9BY19 250 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 GLIPR2Q9H4G4 154 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 RNF167Q9H6Y7 350 aa11.88□□□□□ -0.51
USP53-209ENST00000514665 C19orf25Q9UFG5 118 aaPredicted RBP11.88□□□□□ -0.51
USP53-209ENST00000514665 HSPA12AO43301 675 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 AQP9O43315 295 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 CLEC2LP0C7M8 214 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 HOXC12P31275 282 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 XCR1P46094 333 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 OR1Q1Q15612 314 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 FAM76BQ5HYJ3 339 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 ALDH16A1Q8IZ83 802 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 CELF2-AS1Q8N7Q2 184 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 GDE1Q9NZC3 331 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 COPZ2Q9P299 210 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 KIAA1551Q9HCM1 1747 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 CDC14CA4D256 554 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 C17orf105B2RV13 164 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 PRSS3P35030 304 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 RPS25P62851 125 aaKnown RBP11.87□□□□□ -0.51
USP53-209ENST00000514665 SLC35A2P78381 396 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 AIMP2Q13155 320 aaKnown RBP11.87□□□□□ -0.51
USP53-209ENST00000514665 RAB11BQ15907 218 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 RPE65Q16518 533 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 PCGF3Q3KNV8 242 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 INAVAQ3KP66 663 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 MMP21Q8N119 569 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 CHTF18Q8WVB6 975 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 SLC39A1Q9NY26 324 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 SCN7AQ01118 1682 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 M0R036 132 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 GPR75O95800 540 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 AKR1C4P17516 323 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 SF3A2Q15428 464 aaKnown RBP11.87□□□□□ -0.51
USP53-209ENST00000514665 GXYLT1Q4G148 440 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 FAM69BQ5VUD6 431 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 AFMIDQ63HM1 303 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 OR13C3Q8NGS6 347 aa11.87□□□□□ -0.51
USP53-209ENST00000514665 SNAPC3Q92966 411 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms