RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 ZNF180Q9UJW8 692 aa13.03□□□□□ -0.32
TRAF4-212ENST00000498540 CDC42EP3Q9UKI2 254 aa13.03□□□□□ -0.32
TRAF4-212ENST00000498540 STK38LQ9Y2H1 464 aa13.03□□□□□ -0.32
TRAF4-212ENST00000498540 PLCE1Q9P212 2302 aa13.02□□□□□ -0.32
TRAF4-212ENST00000498540 FAM234BA2RU67 622 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 CCDC151A5D8V7 595 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 UBFD1O14562 309 aaKnown RBP13.02□□□□□ -0.33
TRAF4-212ENST00000498540 LYZL6O75951 148 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 FESP07332 822 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 ATP5F1P24539 256 aaPredicted RBP13.02□□□□□ -0.33
TRAF4-212ENST00000498540 EDNRAP25101 427 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 NUDT6P53370 316 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 PRKAG1P54619 331 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 PRKAA2P54646 552 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 IRX1P78414 480 aaPredicted RBP13.02□□□□□ -0.33
TRAF4-212ENST00000498540 STK11Q15831 433 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 NRF1Q16656 503 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 DUSP5Q16690 384 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 VPS26BQ4G0F5 336 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 ANKRD26P1Q6NSI1 321 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 IKBIPQ70UQ0 350 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.02□□□□□ -0.33
TRAF4-212ENST00000498540 SZRD1Q7Z422 152 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 TDRPQ86YL5 185 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 CDRT4Q8N9R6 151 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 SLC16A11Q8NCK7 471 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 OR10H5Q8NGA6 315 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 B4GALNT2Q8NHY0 566 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 FAM110BQ8TC76 370 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 L3HYPDHQ96EM0 354 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 GSTO2Q9H4Y5 243 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 COQ10BQ9H8M1 238 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 HHATLQ9HCP6 504 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 MID1IP1Q9NPA3 183 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 FAIMQ9NVQ4 179 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 NPAP1Q9NZP6 1156 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 PRSS50Q9UI38 385 aa13.02□□□□□ -0.33
TRAF4-212ENST00000498540 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.02□□□□□ -0.331e-12■■■■□ 19.6
TRAF4-212ENST00000498540 ANK2Q01484 3957 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 IGHV3-15A0A0B4J1V0 119 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 SCDO00767 359 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 ABCD4O14678 606 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 PDPK1O15530 556 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 OIP5O43482 229 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 PRKD3O94806 890 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 YES1P07947 543 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 SNRPAP09012 282 aaKnown RBP13.01□□□□□ -0.33
TRAF4-212ENST00000498540 HPGDP15428 266 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 ENPP1P22413 925 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 ELK4P28324 431 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 GPC1P35052 558 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 RNF144AP50876 292 aaPredicted RBP13.01□□□□□ -0.33
TRAF4-212ENST00000498540 VLDLRP98155 873 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 ZNF117Q03924 483 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 PPA1Q15181 289 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 IMPG1Q17R60 797 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 ZNF385BQ569K4 471 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 CCNJQ5T5M9 372 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 NOXRED1Q6NXP6 359 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 C8orf74Q6P047 294 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 Q6ZT83 130 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 ZNF572Q7Z3I7 529 aaPredicted RBP13.01□□□□□ -0.33
TRAF4-212ENST00000498540 MISPQ8IVT2 679 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 NUP43Q8NFH3 380 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 OR6Y1Q8NGX8 325 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 FAM76AQ8TAV0 307 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 HTRA1Q92743 480 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 MS4A4EQ96PG1 132 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 TNFRSF13CQ96RJ3 184 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 CACNG6Q9BXT2 260 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 CXorf36Q9H7Y0 433 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 GP6Q9HCN6 339 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 TIGARQ9NQ88 270 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 UBQLN4Q9NRR5 601 aa13.01□□□□□ -0.33
TRAF4-212ENST00000498540 ING1Q9UK53 422 aaPredicted RBP13.01□□□□□ -0.33
TRAF4-212ENST00000498540 WBP11Q9Y2W2 641 aaKnown RBP13.01□□□□□ -0.33
TRAF4-212ENST00000498540 A0A1W2PQD3 144 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 ZNF195O14628 629 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 EIF1P41567 113 aaKnown RBP13□□□□□ -0.33
TRAF4-212ENST00000498540 OR3A2P47893 321 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 CASP9P55211 416 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 SRSF2Q01130 221 aaKnown RBP13□□□□□ -0.33
TRAF4-212ENST00000498540 LOXL1Q08397 574 aaPredicted RBP13□□□□□ -0.33
TRAF4-212ENST00000498540 TMEM176BQ3YBM2 270 aaPredicted RBP13□□□□□ -0.33
TRAF4-212ENST00000498540 C11orf71Q6IPW1 123 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 CLEC2AQ6UVW9 174 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 CBLN3Q6UW01 205 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 SLC22A9Q8IVM8 553 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 ATP6V1C2Q8NEY4 427 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 CEP70Q8NHQ1 597 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 FBXO27Q8NI29 283 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 C16orf58Q96GQ5 468 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 KCNK17Q96T54 332 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 USB1Q9BQ65 265 aaKnown RBP13□□□□□ -0.33
TRAF4-212ENST00000498540 PSD2Q9BQI7 771 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 BEX2Q9BXY8 128 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 TMEM160Q9NX00 188 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 NTMQ9P121 344 aa13□□□□□ -0.33
TRAF4-212ENST00000498540 MALRD1Q5VYJ5 2156 aa12.99□□□□□ -0.33
TRAF4-212ENST00000498540 ELOA3DA6NLF2 546 aaPredicted RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms