RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 GLE1Q53GS7 698 aaKnown RBP12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 ARL13AQ5H913 290 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 SLC22A25Q6T423 547 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 DEPDC4Q8N2C3 294 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 CEP112Q8N8E3 955 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 FBF1Q8TES7 1133 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 PSD2Q9BQI7 771 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 PIMREGQ9BSJ6 248 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 C1QTNF3Q9BXJ4 246 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 TAS2R7Q9NYW3 318 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 KLHL9Q9P2J3 617 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 DMGDHQ9UI17 866 aaKnown RBP12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 ZNF225Q9UK10 706 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 ING1Q9UK53 422 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 POU2F3Q9UKI9 436 aa12.56□□□□□ -0.4
PRPF40A-211ENST00000493468 GXYLT2A0PJZ3 443 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 MANBAO00462 879 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 KCNAB3O43448 404 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 KIAA0513O60268 411 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 KRT6AP02538 564 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 KRT6BP04259 564 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 APEHP13798 732 aaKnown RBP12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 ITGA2P17301 1181 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 IGHV1-2P23083 117 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 CD40P25942 277 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 LCN1P31025 176 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 GABRA3P34903 492 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 MAP3K8P41279 467 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 KRT6CP48668 564 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 PDLIM4P50479 330 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 CHRNB3Q05901 458 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 ACSM2AQ08AH3 577 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 GGTLC2Q14390 218 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 CR1LQ2VPA4 569 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 ACSM2BQ68CK6 577 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 KLHL17Q6TDP4 642 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 B3GLCTQ6Y288 498 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 CREG2Q8IUH2 290 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 OR4C3Q8NH37 302 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 ZFAND2BQ8WV99 257 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 ELP4Q96EB1 424 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 C1orf159Q96HA4 380 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 COQ10BQ9H8M1 238 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 SIRT5Q9NXA8 310 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 PRSS50Q9UI38 385 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 PMF1-BGLAPU3KQ54 211 aa12.55□□□□□ -0.4
PRPF40A-211ENST00000493468 A0A1W2PQD3 144 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 PPP6CO00743 305 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 NKX2-2O95096 273 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 COL6A2P12110 1019 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 TYK2P29597 1187 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 NTSP30990 170 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 SPOCK1Q08629 439 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 ZNF763Q0D2J5 394 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 FOXF1Q12946 379 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 VPS26BQ4G0F5 336 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 PLD6Q8N2A8 252 aaKnown RBP12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 ZNF433Q8N7K0 673 aaPredicted RBP12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 OR2W6PQ8NHA6 318 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 SGMS2Q8NHU3 365 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 B4GALNT2Q8NHY0 566 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 FAM110BQ8TC76 370 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 ZFP90Q8TF47 636 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 AMDHD1Q96NU7 426 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 INPP5KQ9BT40 448 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 ACPTQ9BZG2 426 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 GLIPR2Q9H4G4 154 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 CXorf36Q9H7Y0 433 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 MYOZ1Q9NP98 299 aaPredicted RBP12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 FKBP7Q9Y680 259 aa12.54□□□□□ -0.4
PRPF40A-211ENST00000493468 IGHV4-61A0A0C4DH41 118 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 ESYT3A0FGR9 886 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 ZNF724A8MTY0 619 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 SMAD9O15198 467 aaKnown RBP12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 EFNA2O43921 213 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 OR4F21O95013 312 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 TGFAP01135 160 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 CHN1P15882 459 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 ZNF23P17027 643 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 PRIM2P49643 509 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 COMPP49747 757 aaPredicted RBP12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 CDH13P55290 713 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 RAC3P60763 192 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 RASA2Q15283 850 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 PRSS53Q2L4Q9 553 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 TSNAXIP1Q2TAA8 658 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 RPS27LQ71UM5 84 aaKnown RBP12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 MMGT1Q8N4V1 131 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 GATSQ8NAP1 163 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 OR6Y1Q8NGX8 325 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 GPR151Q8TDV0 419 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 PIK3R3Q92569 461 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 APIPQ96GX9 242 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 SH3YL1Q96HL8 342 aaPredicted RBP12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 KLHDC3Q9BQ90 382 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 ERP44Q9BS26 406 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 VPS11Q9H270 941 aa12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 C12orf65Q9H3J6 166 aaKnown RBP12.53□□□□□ -0.4
PRPF40A-211ENST00000493468 MIEF1Q9NQG6 463 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms