RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 WDR36Q8NI36 951 aaKnown RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 PIGXQ8TBF5 258 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 HDAC2Q92769 488 aaKnown RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 OMA1Q96E52 524 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 ADOQ96SZ5 270 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 PRSS27Q9BQR3 290 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 MRPS26Q9BYN8 205 aaKnown RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 SPRY4Q9C004 299 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 TRIM2Q9C040 744 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 B3GNT4Q9C0J1 378 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 NRSN2Q9GZP1 204 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 TMEM27Q9HBJ8 222 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 KRCC1Q9NPI7 259 aaPredicted RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 REV1Q9UBZ9 1251 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 SLC7A7Q9UM01 511 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 NTNG1Q9Y2I2 539 aa8.63□□□□□ -1.03
VPS52-216ENST00000471309 PTRH2Q9Y3E5 179 aaKnown RBP8.63□□□□□ -1.03
VPS52-216ENST00000471309 EXPH5Q8NEV8 1989 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 IGHV1-45A0A0A0MS14 117 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 TRBV11-1A0A0K0K1C0 115 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 A0A1W2PNU3 283 aaPredicted RBP8.62□□□□□ -1.03
VPS52-216ENST00000471309 CDC14CA4D256 554 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 PMS2P1A4D2B8 440 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 OR6C70A6NIJ9 312 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 ZAR1LA6NP61 321 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 KLF4O43474 513 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 ADAM11O75078 769 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 ICOSLGO75144 302 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 REM1O75628 298 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 PPM1BO75688 479 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 UBL4AP11441 157 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 COX6A1P12074 109 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 POU2F1P14859 743 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 NAGAP17050 411 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 ENDOUP21128 410 aaKnown RBP8.62□□□□□ -1.03
VPS52-216ENST00000471309 MMP11P24347 488 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 CHMP24386 653 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 FPR3P25089 353 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 ELK4P28324 431 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 RBM34P42696 430 aaKnown RBP8.62□□□□□ -1.03
VPS52-216ENST00000471309 LIMK1P53667 647 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 CRISP1P54107 249 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 GABARAPL2P60520 117 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 RPP38P78345 283 aaKnown RBP8.62□□□□□ -1.03
VPS52-216ENST00000471309 IL5RAQ01344 420 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 TEKQ02763 1124 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 TARDBPQ13148 414 aaKnown RBP eCLIP8.62□□□□□ -1.034e-7■■□□□ 12.9
VPS52-216ENST00000471309 SKP2Q13309 424 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 TOP3AQ13472 1001 aaPredicted RBP8.62□□□□□ -1.03
VPS52-216ENST00000471309 EFR3AQ14156 821 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 EXT1Q16394 746 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 CTU2Q2VPK5 515 aaKnown RBP8.62□□□□□ -1.03
VPS52-216ENST00000471309 RBM48Q5RL73 367 aaKnown RBP8.62□□□□□ -1.03
VPS52-216ENST00000471309 TMEM164Q5U3C3 297 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 ISLR2Q6UXK2 745 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 RRM2BQ7LG56 351 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 ZER1Q7Z7L7 766 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 CCDC71Q8IV32 467 aaPredicted RBP8.62□□□□□ -1.03
VPS52-216ENST00000471309 NKAIN4Q8IVV8 208 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 APLFQ8IW19 511 aaPredicted RBP8.62□□□□□ -1.03
VPS52-216ENST00000471309 PRR22Q8IZ63 422 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 RNF113BQ8IZP6 322 aaKnown RBP8.62□□□□□ -1.03
VPS52-216ENST00000471309 CACTIN-AS1Q8N1I8 211 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 DEPDC4Q8N2C3 294 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 POGLUT1Q8NBL1 392 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 GNPDA2Q8TDQ7 276 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 ELP5Q8TE02 316 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 TMEM255BQ8WV15 326 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 ZNF566Q969W8 418 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 C8orf44Q96CB5 159 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 CCNL2Q96S94 520 aaPredicted RBP8.62□□□□□ -1.03
VPS52-216ENST00000471309 ZNF426Q9BUY5 554 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 FAM117AQ9C073 453 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 ZNF700Q9H0M5 742 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 FAM86C1Q9NVL1 165 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 FLRT3Q9NZU0 649 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 BLOC1S6Q9UL45 172 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 PADI1Q9ULC6 663 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 PCDHGA6Q9Y5G7 932 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 HS3ST3B1Q9Y662 390 aa8.62□□□□□ -1.03
VPS52-216ENST00000471309 ASCC3Q8N3C0 2202 aaKnown RBP8.61□□□□□ -1.03
VPS52-216ENST00000471309 A0A1B0GWA3 101 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 A6NHS1 94 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 TMEM200CA6NKL6 621 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 TRIM64CA6NLI5 447 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 ALG1L2C9J202 215 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 SLC1A7O00341 560 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 ZNF264O43296 627 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 ZFAND5O76080 213 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 OR6B1O95007 311 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 NADKO95544 446 aaPredicted RBP8.61□□□□□ -1.03
VPS52-216ENST00000471309 TP53P04637 393 aaPredicted RBP8.61□□□□□ -1.03
VPS52-216ENST00000471309 CCDC159P0C7I6 412 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 OMPP47874 163 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 GSSP48637 474 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 TMED10P49755 219 aaKnown RBP8.61□□□□□ -1.03
VPS52-216ENST00000471309 HLCSP50747 726 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 CXCR4P61073 352 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 TUBA4AP68366 448 aa8.61□□□□□ -1.03
VPS52-216ENST00000471309 LSM11P83369 360 aaKnown RBP eCLIP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms