RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CD207Q9UJ71 328 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 MAGEB4O15481 346 aaPredicted RBP17.7■□□□□ 0.42
VIM-203ENST00000469543 TMCC2O75069 709 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 GPR75O95800 540 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 IL1AP01583 271 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 IGHV4-34P06331 123 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 SAGP10523 405 aaPredicted RBP17.7■□□□□ 0.42
VIM-203ENST00000469543 RCVRNP35243 200 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 SLC9A3P48764 834 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 MAT1AQ00266 395 aaKnown RBP17.7■□□□□ 0.42
VIM-203ENST00000469543 P2RY14Q15391 338 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 GLYR1Q49A26 553 aaPredicted RBP17.7■□□□□ 0.42
VIM-203ENST00000469543 FAM27D1Q5T7N8 215 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 QSOX2Q6ZRP7 698 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 GHDCQ8N2G8 530 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 METTL27Q8N6F8 245 aaPredicted RBP17.7■□□□□ 0.42
VIM-203ENST00000469543 AVL9Q8NBF6 648 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 ATP6V1C2Q8NEY4 427 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 TMEM239Q8WW34 195 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 MCOLN1Q9GZU1 580 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 H2AFY2Q9P0M6 372 aaPredicted RBP17.7■□□□□ 0.42
VIM-203ENST00000469543 CLCA3PQ9Y6N3 262 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 CDH10Q9Y6N8 788 aa17.7■□□□□ 0.42
VIM-203ENST00000469543 IQCMA0A1B0GVH7 501 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 SNTNA6NMZ2 147 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 C12orf71A8MTZ7 269 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 GALR3O60755 368 aaPredicted RBP17.69■□□□□ 0.42
VIM-203ENST00000469543 ATP1B1P05026 303 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 HCCSP53701 268 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 NDUFAF6Q330K2 333 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 PDZK1Q5T2W1 519 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 GLCCI1Q86VQ1 547 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 TMEM99Q8N816 258 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 OR52R1Q8NGF1 315 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 ANKRD9Q96BM1 317 aaPredicted RBP17.69■□□□□ 0.42
VIM-203ENST00000469543 LMAN2LQ9H0V9 348 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 TNFRSF10DQ9UBN6 386 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 ZNF223Q9UK11 482 aaPredicted RBP17.69■□□□□ 0.42
VIM-203ENST00000469543 CYP8B1Q9UNU6 501 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 URADA6NGE7 173 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 LRRN3E7EW58 273 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 E9PI62 339 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 HPGDSO60760 199 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 SEMA4FO95754 770 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 APOA1P02647 267 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 CSF3P09919 207 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 NID1P14543 1247 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 GABRA5P31644 462 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 OR2B6P58173 313 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 FAM53BQ14153 422 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 NR2C2APQ86WQ0 139 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 GATAD2AQ86YP4 633 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 CA13Q8N1Q1 262 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 FANK1Q8TC84 345 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 SENP5Q96HI0 755 aaPredicted RBP17.69■□□□□ 0.42
VIM-203ENST00000469543 CCDC32Q9BV29 185 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 LRRN3Q9H3W5 708 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 CCDC86Q9H6F5 360 aaKnown RBP17.69■□□□□ 0.42
VIM-203ENST00000469543 HCN3Q9P1Z3 774 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 WDFY4Q6ZS81 3184 aa17.69■□□□□ 0.42
VIM-203ENST00000469543 A0A0A6YYC8 382 aaPredicted RBP17.68■□□□□ 0.42
VIM-203ENST00000469543 A0A1B0GVC2 190 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 TRAPPC13A5PLN9 417 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 A6NIN4 97 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 TGFBR3LH3BV60 316 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 I3L1I5 382 aaPredicted RBP17.68■□□□□ 0.42
VIM-203ENST00000469543 STK25O00506 426 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 LYPD3O95274 346 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 HOXC4P09017 264 aaPredicted RBP17.68■□□□□ 0.42
VIM-203ENST00000469543 IL9P15248 144 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 RPTNQ6XPR3 784 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 ARIH2OSQ8N7S6 290 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 RFKQ969G6 155 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 ITFG2Q969R8 447 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 BPIFA2Q96DR5 249 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 ANKRD19PQ9H560 264 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 MSRAQ9UJ68 235 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 NDRG2Q9UN36 371 aaKnown RBP17.68■□□□□ 0.42
VIM-203ENST00000469543 EXOSC1Q9Y3B2 195 aaKnown RBP17.68■□□□□ 0.42
VIM-203ENST00000469543 UNC119BA6NIH7 251 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 C2orf74A8MZ97 194 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 GABRPO00591 440 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 IGKV1D-16P01601 117 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 NGFRP08138 427 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 HTR1FP30939 366 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 EMDP50402 254 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 RPS7P62081 194 aaKnown RBP17.68■□□□□ 0.42
VIM-203ENST00000469543 EOGTQ5NDL2 527 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 TMEM91Q6ZNR0 172 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 RANBP3LQ86VV4 465 aaPredicted RBP17.68■□□□□ 0.42
VIM-203ENST00000469543 MARCH9Q86YJ5 346 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 GJD3Q8N144 294 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 OR51L1Q8NGJ5 315 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 NEIL3Q8TAT5 605 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 ABHD8Q96I13 439 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 MSLNLQ96KJ4 702 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 CD180Q99467 661 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 CCDC3Q9BQI4 270 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 IFT27Q9BW83 186 aa17.68■□□□□ 0.42
VIM-203ENST00000469543 FLRT3Q9NZU0 649 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms