RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 OR13C2Q8NGS9 318 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 C14orf105Q9NVL8 296 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 NCOR2Q9Y618 2525 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 DOCK8Q8NF50 2099 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 TRBV2A0A0J9YWF9 115 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 SLC9B1P1A6NJY1 282 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 AQP9O43315 295 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 HCRTR2O43614 444 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 HPGDSO60760 199 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 CEACAM5P06731 702 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 TRIM23P36406 574 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 PPP2CBP62714 309 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 PPP2CAP67775 309 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 TP53I3Q53FA7 332 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 TTLL10Q6ZVT0 673 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 RBM12BQ8IXT5 1001 aaKnown RBP10.86□□□□□ -0.67
NPHP4-204ENST00000460696 SYT14Q8NB59 555 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 GPR32P1Q8NGA4 272 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 GOT1L1Q8NHS2 421 aaPredicted RBP10.86□□□□□ -0.67
NPHP4-204ENST00000460696 ITFG2Q969R8 447 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 TBC1D20Q96BZ9 403 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 ITPKCQ96DU7 683 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 TOE1Q96GM8 510 aaKnown RBP10.86□□□□□ -0.67
NPHP4-204ENST00000460696 WASH6PQ9NQA3 447 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 POU2F3Q9UKI9 436 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 HSPB11Q9Y547 144 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 KCNE3Q9Y6H6 103 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 ZSWIM8A7E2V4 1837 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 NOTCH2Q04721 2471 aa10.86□□□□□ -0.67
NPHP4-204ENST00000460696 CXorf51AA0A1B0GTR3 108 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 IL7P13232 177 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 TNFRSF17Q02223 184 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 PRKCDQ05655 676 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 UBE2Q1Q7Z7E8 422 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 SGTBQ96EQ0 304 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 PLA2G2FQ9BZM2 168 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 SMOC1Q9H4F8 434 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 PIP5K1CO60331 668 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 NOS1APO75052 506 aaPredicted RBP10.85□□□□□ -0.67
NPHP4-204ENST00000460696 PAPLNO95428 1278 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 SLC1A3P43003 542 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 MAN2A2P49641 1150 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 PDE7AQ13946 482 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 DUSP5Q16690 384 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 ZNF793Q6ZN11 406 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 ZDHHC1Q8WTX9 485 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 ZG16BQ96DA0 208 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 TMEM246Q9BRR3 403 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 FKBP7Q9Y680 259 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 BRCA2P51587 3418 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 SULT1C4O75897 302 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 RENP00797 406 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 ETV5P41161 510 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 ARRB1P49407 418 aaPredicted RBP10.85□□□□□ -0.67
NPHP4-204ENST00000460696 ETV1P50549 477 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 MPEG1Q2M385 716 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 ARTNQ5T4W7 220 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 MFSD12Q6NUT3 480 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 IL20RBQ6UXL0 311 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 PHC2Q8IXK0 858 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 OR6N2Q8NGY6 317 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 CDADC1Q9BWV3 514 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 SLIRPQ9GZT3 109 aaKnown RBP10.85□□□□□ -0.67
NPHP4-204ENST00000460696 TP63Q9H3D4 680 aaPredicted RBP10.85□□□□□ -0.67
NPHP4-204ENST00000460696 ATP13A2Q9NQ11 1180 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 AKIP1Q9NQ31 210 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 UCKL1Q9NWZ5 548 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 SLC6A14Q9UN76 642 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 ERVK-19Q9WJR5 959 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 IER3IP1Q9Y5U9 82 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 CHD5Q8TDI0 1954 aa10.85□□□□□ -0.67
NPHP4-204ENST00000460696 APEX1P27695 318 aaKnown RBP10.84□□□□□ -0.67
NPHP4-204ENST00000460696 CSNK1EP49674 416 aaKnown RBP10.84□□□□□ -0.67
NPHP4-204ENST00000460696 SRSF5Q13243 272 aaKnown RBP10.84□□□□□ -0.67
NPHP4-204ENST00000460696 GDF7Q7Z4P5 450 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 GPALPP1Q8IXQ4 340 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 ETFBKMTQ8IXQ9 262 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 SLC7A5P1Q8MH63 180 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 THAP3Q8WTV1 239 aaPredicted RBP10.84□□□□□ -0.67
NPHP4-204ENST00000460696 APH1BQ8WW43 257 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 NKD1Q969G9 470 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 RFT1Q96AA3 541 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 OMA1Q96E52 524 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 COMMD4Q9H0A8 199 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 NANSQ9NR45 359 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 FBXO8Q9NRD0 319 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 GPATCH2Q9NW75 528 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 MRPL15Q9P015 296 aaKnown RBP10.84□□□□□ -0.67
NPHP4-204ENST00000460696 AKAP7Q9P0M2 348 aaPredicted RBP10.84□□□□□ -0.67
NPHP4-204ENST00000460696 ARID1AO14497 2285 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 ABCA7Q8IZY2 2146 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 COL6A6A6NMZ7 2263 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 UBE2QL1A1L167 161 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 TRIM64CA6NLI5 447 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 AK1P00568 194 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 TAS2R43P59537 309 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 SNRPGP62308 76 aaKnown RBP10.84□□□□□ -0.67
NPHP4-204ENST00000460696 MAT1AQ00266 395 aaKnown RBP10.84□□□□□ -0.67
NPHP4-204ENST00000460696 KCNJ8Q15842 424 aa10.84□□□□□ -0.67
NPHP4-204ENST00000460696 ARHGAP40Q5TG30 622 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms