RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ACTA1P68133 377 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 TUBA1BP68363 451 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 TUBA1AQ71U36 451 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 OAFQ86UD1 273 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 AMER2Q8N7J2 671 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 ZBTB44Q8NCP5 570 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 RCBTB1Q8NDN9 531 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 CNIH3Q8TBE1 160 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 SOX17Q9H6I2 414 aaPredicted RBP7.76□□□□□ -1.17
USP54-203ENST00000418501 INPP5EQ9NRR6 644 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 ERVK-11Q9UQG0 969 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 BRWD1Q9NSI6 2320 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 SRCAPQ6ZRS2 3230 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 IDSB3KWA1 339 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 PRR23D1E9PI22 279 aaPredicted RBP7.76□□□□□ -1.17
USP54-203ENST00000418501 PRODHO43272 600 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 OR2T1O43869 369 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 FCMRO60667 390 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 NDUFB2O95178 105 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 PRR23D2P0DMB1 279 aaPredicted RBP7.76□□□□□ -1.17
USP54-203ENST00000418501 LIMS1P48059 325 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 MC2RQ01718 297 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 PRKCDQ05655 676 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 RAB40BQ12829 278 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 CNPY1Q3B7I2 92 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 CCDC157Q569K6 752 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 GPR107Q5VW38 600 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 CPEB2Q7Z5Q1 589 aaKnown RBP7.76□□□□□ -1.17
USP54-203ENST00000418501 TMEM163Q8TC26 289 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 BPIFA2Q96DR5 249 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 TAAR9Q96RI9 348 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 IL4I1Q96RQ9 567 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 ASPNQ9BXN1 380 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 CTPS2Q9NRF8 586 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 ZNF337Q9Y3M9 751 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 PCDHGA6Q9Y5G7 932 aa7.76□□□□□ -1.17
USP54-203ENST00000418501 MYOCOSA0A1B0GUC4 107 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 GXYLT2A0PJZ3 443 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 TO15178 435 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 HCRTR2O43614 444 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 RFPL3O75679 317 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 OR6B1O95007 311 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 AHSA1O95433 338 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 TFAP2AP05549 437 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 SMIM18P0DKX4 95 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 ACP1P24666 158 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 ACVR2AP27037 513 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 CSF2RBP32927 897 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 S100A5P33763 92 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 ZNF41P51814 821 aaPredicted RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 BLVRAP53004 296 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 TAS2R43P59537 309 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 DUSP2Q05923 314 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 PAPD4Q6PIY7 484 aaKnown RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 SMARCD3Q6STE5 483 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 DGLUCYQ7Z3D6 616 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 B3GNT8Q7Z7M8 397 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 CROCCP3Q8IVE0 287 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 SFTPA2Q8IWL1 248 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 SPARTQ8N0X7 666 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 FAM26EQ8N5C1 309 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 TCEANCQ8N8B7 351 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 FAM98AQ8NCA5 519 aaKnown RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 BRIX1Q8TDN6 353 aaKnown RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 DUSP21Q9H596 190 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 KCNE3Q9Y6H6 103 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 SLCO1B1Q9Y6L6 691 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 TLX2O43763 284 aaPredicted RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 CDK1P06493 297 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 GCGRP47871 477 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 CDH11P55287 796 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 C17orf67Q0P5P2 114 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 MGAT2Q10469 447 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 GDPGP1Q6ZNW5 385 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 ESX1Q8N693 406 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 S100ZQ8WXG8 99 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 FAM46AQ96IP4 442 aaKnown RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 ULBP3Q9BZM4 244 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 VN1R1Q9GZP7 353 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 METTL7AQ9H8H3 244 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 LANCL2Q9NS86 450 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 PSORS1C1Q9UIG5 152 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 PADI1Q9ULC6 663 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 A0A087WUU8 490 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 TRIM64CA6NLI5 447 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 MEN1O00255 615 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 RENP00797 406 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 IGF2P01344 180 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 TDGF1P13385 188 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 PSMA1P25786 263 aaKnown RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 PTGER1P34995 402 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 SLC16A1P53985 500 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 CDH15P55291 814 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 SRSF5Q13243 272 aaKnown RBP7.75□□□□□ -1.17
USP54-203ENST00000418501 PGGHGQ32M88 737 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 PERM1Q5SV97 790 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 NANOGNBQ7Z5D8 188 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 ENTHD1Q8IYW4 607 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 KLHL36Q8N4N3 616 aa7.75□□□□□ -1.17
USP54-203ENST00000418501 LSMEM1Q8N8F7 131 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms