RNA–Protein interactions for RNA: ENST00000367740.2

VAMP4-202, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VAMP4, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-202ENST00000367740 C9JVG2 144 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 EFNA2O43921 213 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 STMN1P16949 149 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 PGCP20142 388 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 SLC18A2Q05940 514 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 FOXL1Q12952 345 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 GTF2H2Q13888 395 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 DMRTA1Q5VZB9 504 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 FRG2Q64ET8 278 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 GTF2H2CQ6P1K8 395 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 UGT2A3Q6UWM9 527 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 ZDHHC22Q8N966 263 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 NUP43Q8NFH3 380 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 ACTRT2Q8TDY3 377 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 FBF1Q8TES7 1133 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 ZNF75CPQ92670 426 aaPredicted RBP12.79□□□□□ -0.36
VAMP4-202ENST00000367740 ZNF775Q96BV0 537 aaPredicted RBP12.79□□□□□ -0.36
VAMP4-202ENST00000367740 FRG2BQ96QU4 278 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 GPR22Q99680 433 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 FAIM2Q9BWQ8 316 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 IPPKQ9H8X2 491 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 HIF1ANQ9NWT6 349 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 NSMCE4AQ9NXX6 385 aa12.79□□□□□ -0.36
VAMP4-202ENST00000367740 GOLGA6L10A0A0M3HER8 536 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 CIB4A0PJX0 185 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 ALG1L2C9J202 215 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 COQ9O75208 318 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 ALX3O95076 343 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 IGKV1D-16P01601 117 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 IGHV3-9P01782 118 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 LINGO3P0C6S8 592 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 HKR1P10072 659 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 DAOP14920 347 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 ZFP36P26651 326 aaKnown RBP12.78□□□□□ -0.36
VAMP4-202ENST00000367740 ELK4P28324 431 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 FOXF1Q12946 379 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 ANKMY2Q8IV38 441 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 PDIK1LQ8N165 341 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 GATSQ8NAP1 163 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.78□□□□□ -0.361e-7■■■■■ 28.3
VAMP4-202ENST00000367740 EXOSC8Q96B26 276 aaKnown RBP12.78□□□□□ -0.36
VAMP4-202ENST00000367740 TMEM186Q96B77 213 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 Q9N2J8 555 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 SENP1Q9P0U3 644 aa12.78□□□□□ -0.36
VAMP4-202ENST00000367740 OR7A17O14581 309 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 PSMG1O95456 288 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 PPOXP50336 477 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 PSMD4P55036 377 aaKnown RBP12.77□□□□□ -0.37
VAMP4-202ENST00000367740 RAB10P61026 200 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 UBA52P62987 128 aaKnown RBP12.77□□□□□ -0.37
VAMP4-202ENST00000367740 SLC25A3Q00325 362 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 RASGEF1BQ0VAM2 473 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 RIN1Q13671 783 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 FASTKD3Q14CZ7 662 aaKnown RBP12.77□□□□□ -0.37
VAMP4-202ENST00000367740 OCLNQ16625 522 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 C1orf229Q6ZS94 237 aaPredicted RBP12.77□□□□□ -0.37
VAMP4-202ENST00000367740 ZNF100Q8IYN0 542 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 FAM9CQ8IZT9 166 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 TOR1AIP2Q8NFQ8 470 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 ZFP90Q8TF47 636 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 LRRC39Q96DD0 335 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 SH3YL1Q96HL8 342 aaPredicted RBP12.77□□□□□ -0.37
VAMP4-202ENST00000367740 SUCNR1Q9BXA5 334 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 MRTO4Q9UKD2 239 aaKnown RBP12.77□□□□□ -0.37
VAMP4-202ENST00000367740 SLC12A4Q9UP95 1085 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 MOKQ9UQ07 419 aa12.77□□□□□ -0.37
VAMP4-202ENST00000367740 WBP11Q9Y2W2 641 aaKnown RBP12.77□□□□□ -0.37
VAMP4-202ENST00000367740 CCT8L1PA6NM43 557 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 OXSR1O95747 527 aaPredicted RBP12.76□□□□□ -0.37
VAMP4-202ENST00000367740 IDH3GP51553 393 aaPredicted RBP12.76□□□□□ -0.37
VAMP4-202ENST00000367740 FOXG1P55316 489 aaPredicted RBP12.76□□□□□ -0.37
VAMP4-202ENST00000367740 TRA2BP62995 288 aaKnown RBP12.76□□□□□ -0.37
VAMP4-202ENST00000367740 ILF2Q12905 390 aaKnown RBP12.76□□□□□ -0.37
VAMP4-202ENST00000367740 PPP1R7Q15435 360 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 GABRA6Q16445 453 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 PFKFB4Q16877 469 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 FBXW9Q5XUX1 488 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 WDR31Q8NA23 367 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 GRK7Q8WTQ7 553 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 MS4A14Q96JA4 679 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 RBBP8Q99708 897 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 SLC6A7Q99884 636 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 CDC42EP4Q9H3Q1 356 aaKnown RBP12.76□□□□□ -0.37
VAMP4-202ENST00000367740 UNKLQ9H9P5 680 aaKnown RBP12.76□□□□□ -0.37
VAMP4-202ENST00000367740 LPAR2Q9HBW0 351 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 FARSBQ9NSD9 589 aaKnown RBP12.76□□□□□ -0.37
VAMP4-202ENST00000367740 GRIP1Q9Y3R0 1128 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 PTGDR2Q9Y5Y4 395 aa12.76□□□□□ -0.37
VAMP4-202ENST00000367740 GXYLT2A0PJZ3 443 aa12.75□□□□□ -0.37
VAMP4-202ENST00000367740 GJE1A6NN92 205 aa12.75□□□□□ -0.37
VAMP4-202ENST00000367740 ZNF724A8MTY0 619 aa12.75□□□□□ -0.37
VAMP4-202ENST00000367740 CXorf49A8MYA2 514 aaPredicted RBP12.75□□□□□ -0.37
VAMP4-202ENST00000367740 CYTIPO60759 359 aa12.75□□□□□ -0.37
VAMP4-202ENST00000367740 ESRRBO95718 433 aa12.75□□□□□ -0.37
VAMP4-202ENST00000367740 IL3P08700 152 aa12.75□□□□□ -0.37
VAMP4-202ENST00000367740 GFAPP14136 432 aa12.75□□□□□ -0.37
VAMP4-202ENST00000367740 SERPINF1P36955 418 aa12.75□□□□□ -0.37
VAMP4-202ENST00000367740 ARL1P40616 181 aaPredicted RBP12.75□□□□□ -0.37
VAMP4-202ENST00000367740 EIF1P41567 113 aaKnown RBP12.75□□□□□ -0.37
VAMP4-202ENST00000367740 PRIM2P49643 509 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms