RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 SEC61A1P61619 476 aaKnown RBP17.3■□□□□ 0.36
SHANK1-202ENST00000359082 FGFBP1Q14512 234 aa17.3■□□□□ 0.36
SHANK1-202ENST00000359082 EXOSC7Q15024 291 aaKnown RBP17.3■□□□□ 0.36
SHANK1-202ENST00000359082 CNN3Q15417 329 aaKnown RBP17.3■□□□□ 0.36
SHANK1-202ENST00000359082 ZNF789Q5FWF6 425 aa17.3■□□□□ 0.36
SHANK1-202ENST00000359082 COQ5Q5HYK3 327 aa17.3■□□□□ 0.36
SHANK1-202ENST00000359082 KDM1BQ8NB78 822 aa17.3■□□□□ 0.36
SHANK1-202ENST00000359082 C4orf36Q96KX1 117 aa17.3■□□□□ 0.36
SHANK1-202ENST00000359082 VRK1Q99986 396 aaPredicted RBP17.3■□□□□ 0.36
SHANK1-202ENST00000359082 HAPLN2Q9GZV7 340 aa17.3■□□□□ 0.36
SHANK1-202ENST00000359082 C19orf12Q9NSK7 152 aa17.3■□□□□ 0.36
SHANK1-202ENST00000359082 MED16Q9Y2X0 877 aa17.3■□□□□ 0.36
SHANK1-202ENST00000359082 RNASET2O00584 256 aaKnown RBP17.29■□□□□ 0.36
SHANK1-202ENST00000359082 GYPBP06028 91 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 FGL2Q14314 439 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 LCN10Q6JVE6 187 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 GPR148Q8TDV2 347 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 WDR6Q9NNW5 1121 aaKnown RBP17.29■□□□□ 0.36
SHANK1-202ENST00000359082 PLEK2Q9NYT0 353 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 PCDHB10Q9UN67 800 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 UPK1BO75841 260 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 PTTG1O95997 202 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 CA5AP35218 305 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 CDRT4Q8N9R6 151 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 MDGA1Q8NFP4 955 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 OR4K15Q8NH41 348 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 TRBV11-1A0A0K0K1C0 115 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 EDN3P14138 238 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 TIMP2P16035 220 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 B3GNT7Q8NFL0 401 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 PAQR8Q8TEZ7 354 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 UHRF1Q96T88 793 aaPredicted RBP17.29■□□□□ 0.36
SHANK1-202ENST00000359082 ZFP57Q9NU63 452 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 CAMK2AQ9UQM7 478 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 TNFSF4P23510 183 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 IL4RP24394 825 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 CSNK1A1P48729 337 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 CYCSP99999 105 aaKnown RBP17.29■□□□□ 0.36
SHANK1-202ENST00000359082 ACY1Q03154 408 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 LCTLQ6UWM7 567 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 THAP7Q9BT49 309 aaPredicted RBP17.29■□□□□ 0.36
SHANK1-202ENST00000359082 FKRPQ9H9S5 495 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 ZNF780AO75290 641 aaPredicted RBP17.29■□□□□ 0.36
SHANK1-202ENST00000359082 ARHGEF15O94989 841 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 CHCHD4Q8N4Q1 142 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 TMIGD2Q96BF3 282 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 OR51E2Q9H255 320 aa17.29■□□□□ 0.36
SHANK1-202ENST00000359082 DDX31Q9H8H2 851 aaKnown RBP17.29■□□□□ 0.36
SHANK1-202ENST00000359082 NPC1O15118 1278 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 GABRA2P47869 451 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 CD163Q86VB7 1156 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 LRRC18Q8N456 261 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 CNEP1R1Q8N9A8 125 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 OR2T35Q8NGX2 323 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 TANKQ92844 425 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 NEIL2Q969S2 332 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 INTS14Q96SY0 518 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 SLA2Q9H6Q3 261 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 RAB9BQ9NP90 201 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 LILRB3O75022 631 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 OPRL1P41146 370 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 DESI1Q6ICB0 168 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 FBXW12Q6X9E4 464 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 TEX19Q8NA77 164 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 LMAN1LQ9HAT1 526 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 BTNL2Q9UIR0 455 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 RPH3ALQ9UNE2 315 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 CEBPBP17676 345 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 GJA5P36382 358 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 TDGQ13569 410 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 POU4F3Q15319 338 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 PDZD3Q86UT5 571 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 GOLM1Q8NBJ4 401 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 ZNF417Q8TAU3 575 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 SPIN2AQ99865 258 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 SPIN2BQ9BPZ2 258 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 RTP3Q9BQQ7 232 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 TUBG2Q9NRH3 451 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 A6NIN4 97 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 PXNP49023 591 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-202ENST00000359082 GLO1Q04760 184 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 KEAP1Q14145 624 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 HSD11B1LQ7Z5J1 315 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 OR52E1Q8NGJ3 308 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 FNDC9Q8TBE3 224 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 ZNF443Q9Y2A4 671 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-202ENST00000359082 SRPX2O60687 465 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-202ENST00000359082 BMPR1AP36894 532 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 RPL23AP62750 156 aaKnown RBP17.28■□□□□ 0.36
SHANK1-202ENST00000359082 DTWD1Q8N5C7 304 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 MYLIPQ8WY64 445 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 NT5C3BQ969T7 300 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 CHRDQ9H2X0 955 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 BIN3Q9NQY0 253 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 HCFC1R1Q9NWW0 138 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 MCTS1Q9ULC4 181 aaKnown RBP17.28■□□□□ 0.36
SHANK1-202ENST00000359082 MEGF11A6BM72 1044 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 FAM155AB1AL88 458 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-202ENST00000359082 H3BMQ9 156 aa17.28■□□□□ 0.36
SHANK1-202ENST00000359082 BCAS1O75363 584 aaPredicted RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms