RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ZNF322Q6U7Q0 402 aaPredicted RBP20.2■□□□□ 0.82
SHMT1-202ENST00000352886 ZNF438Q7Z4V0 828 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 GID4Q8IVV7 300 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 HMGB4Q8WW32 186 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 AGAP4Q96P64 663 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 CLDND1Q9NY35 253 aa20.2■□□□□ 0.82
SHMT1-202ENST00000352886 ZC3H12DA2A288 527 aaKnown RBP20.19■□□□□ 0.82
SHMT1-202ENST00000352886 BHLHE40O14503 412 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 BRINP1O60477 761 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 TMCC2O75069 709 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 HLA-DPB1P04440 258 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 TBXA2RP21731 343 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 PAICSP22234 425 aaKnown RBP20.19■□□□□ 0.82
SHMT1-202ENST00000352886 MAP3K8P41279 467 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 MANEAQ5SRI9 462 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 ZAR1Q86SH2 424 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 KLBQ86Z14 1044 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 CHAC2Q8WUX2 184 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 CCDC3Q9BQI4 270 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 POU2F3Q9UKI9 436 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 HS3ST3A1Q9Y663 406 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-202ENST00000352886 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-202ENST00000352886 FAM221BA6H8Z2 402 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 GABRPO00591 440 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 PLAURQ03405 335 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 SCN1BQ07699 218 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 DBPQ10586 325 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-202ENST00000352886 FZD5Q13467 585 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 MADCAM1Q13477 382 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 EOGTQ5NDL2 527 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 NIPAL3Q6P499 406 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 MARCH9Q86YJ5 346 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 ANKRD9Q96BM1 317 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-202ENST00000352886 COMMD3Q9UBI1 195 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 COL4A2P08572 1712 aa20.19■□□□□ 0.82
SHMT1-202ENST00000352886 J3QRE1 110 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 RDH16O75452 317 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 AK1P00568 194 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 PDZK1Q5T2W1 519 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 VASNQ6EMK4 673 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 DGAT2L6Q6ZPD8 337 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 NEIL3Q8TAT5 605 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 CTHRC1Q96CG8 243 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 BPIFA2Q96DR5 249 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 JAM3Q9BX67 310 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 GSDMCQ9BYG8 508 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 ISG20L2Q9H9L3 353 aaKnown RBP20.18■□□□□ 0.82
SHMT1-202ENST00000352886 KNL1Q8NG31 2342 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 C12orf71A8MTZ7 269 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 A8MU76 341 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 FMO6PO60774 539 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 CSF3P09919 207 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 RABIFP47224 123 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 DAB2P98082 770 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 GPR50Q13585 617 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 DEFB110Q30KQ9 67 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 ZC3H14Q6PJT7 736 aaKnown RBP20.18■□□□□ 0.82
SHMT1-202ENST00000352886 ABI3BPQ7Z7G0 1075 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 ZNF614Q8N883 585 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 ATP6V1C2Q8NEY4 427 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 OR13C2Q8NGS9 318 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 PHOX2BQ99453 314 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 COQ7Q99807 217 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 HCAR1Q9BXC0 346 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 FN3KQ9H479 309 aa20.18■□□□□ 0.82
SHMT1-202ENST00000352886 SYNDIG1LA6NDD5 238 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 SAGP10523 405 aaPredicted RBP20.17■□□□□ 0.82
SHMT1-202ENST00000352886 SSTR4P31391 388 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 THSD4Q6ZMP0 1018 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 ZNF517Q6ZMY9 492 aaPredicted RBP20.17■□□□□ 0.82
SHMT1-202ENST00000352886 MEPCEQ7L2J0 689 aaKnown RBP20.17■□□□□ 0.82
SHMT1-202ENST00000352886 CDK20Q8IZL9 346 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 LNX2Q8N448 690 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 ACBD7Q8N6N7 88 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 OR52R1Q8NGF1 315 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 GRHL3Q8TE85 626 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 TBX5Q99593 518 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 FAM60AQ9NP50 221 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 MED31Q9Y3C7 131 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 KIR2DS5A0A0G2JLQ3 304 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 A0A0G2JNG1 304 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 SHISA3A0PJX4 238 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 CD8B2A6NJW9 211 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 KIR2DS3K7RE56 304 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 POLR1CO15160 346 aaPredicted RBP20.17■□□□□ 0.82
SHMT1-202ENST00000352886 CCNKO75909 580 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 NCR1O76036 304 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 CBX7O95931 251 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 CTSBP07858 339 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 CD8BP10966 210 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 TYRP1P17643 537 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 NKX2-5P52952 324 aaPredicted RBP20.17■□□□□ 0.82
SHMT1-202ENST00000352886 KIR2DS5Q14953 304 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 RAB30Q15771 203 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 AMZ1Q400G9 498 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 PYDC2Q56P42 97 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 PRPF38BQ5VTL8 546 aaKnown RBP20.17■□□□□ 0.82
SHMT1-202ENST00000352886 TAF8Q7Z7C8 310 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 UBQLNLQ8IYU4 475 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms