RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SPO11Q9Y5K1 396 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 CHRNB2P17787 502 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 S100A5P33763 92 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 FAM53BQ14153 422 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 CDK10Q15131 360 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 FBXO48Q5FWF7 155 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 AFMIDQ63HM1 303 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 CCDC36Q8IYA8 594 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 TSPEARQ8WU66 669 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 SPOCK2Q92563 424 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 CAVIN3Q969G5 261 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 RFKQ969G6 155 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 ZNF442Q9H7R0 627 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 IL26Q9NPH9 171 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 GPATCH2Q9NW75 528 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 HAO2Q9NYQ3 351 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 NLKQ9UBE8 527 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 TRAF6Q9Y4K3 522 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 USP3Q9Y6I4 520 aa7.81□□□□□ -1.16
HMGB1-203ENST00000341423 FURINP09958 794 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 TACR1P25103 407 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 ECHS1P30084 290 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 HERV-K104P61576 105 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 DPTQ07507 201 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 QSOX2Q6ZRP7 698 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 NLRP8Q86W28 1048 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 ZNF740Q8NDX6 193 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 C1orf162Q8NEQ5 155 aaPredicted RBP7.8□□□□□ -1.16
HMGB1-203ENST00000341423 SGTBQ96EQ0 304 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 MS4A4EQ96PG1 132 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 HEXA-AS1Q9H8Q6 139 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 LIN28AQ9H9Z2 209 aaKnown RBP7.8□□□□□ -1.16
HMGB1-203ENST00000341423 ZNF670-ZNF695F2Z2N8 137 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 PDCD5O14737 125 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 RIPK2O43353 540 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 BPNT1O95861 308 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 SP1P08047 785 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 CD3GP09693 182 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 DEFA4P12838 97 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 ETS2P15036 469 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 ATP6AP1Q15904 470 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 DNAJA4Q8WW22 397 aaPredicted RBP7.8□□□□□ -1.16
HMGB1-203ENST00000341423 MCHR1Q99705 422 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 TMEM74BQ9NUR3 256 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 RDH8Q9NYR8 311 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 USP36Q9P275 1121 aaKnown RBP7.8□□□□□ -1.16
HMGB1-203ENST00000341423 SLC17A6Q9P2U8 582 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 ZNF878C9JN71 531 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 OR1I1O60431 355 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 RGS11O94810 467 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 CRABP1P29762 137 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 ARL3P36405 182 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 POLR2HP52434 150 aaKnown RBP7.8□□□□□ -1.16
HMGB1-203ENST00000341423 TAS2R40P59535 323 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 PKP1Q13835 747 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 GALEQ14376 348 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 CD276Q5ZPR3 534 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 CYB5R2Q6BCY4 276 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 P2RY8Q86VZ1 359 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 SPATA4Q8NEY3 305 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 ST8SIA4Q92187 359 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 ZNF462Q96JM2 2506 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 CRYM-AS1A6NIL9 109 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 PMM2O15305 246 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 UGDHO60701 494 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 KNG1P01042 644 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 HSMCR30P0CW71 290 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 IFI30P13284 250 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 ADAM17P78536 824 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 SMCO1Q147U7 214 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 OR4F3Q6IEY1 312 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 RHBDD2Q6NTF9 364 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 BHLHA15Q7RTS1 189 aaPredicted RBP7.8□□□□□ -1.16
HMGB1-203ENST00000341423 ZC3H3Q8IXZ2 948 aaKnown RBP7.8□□□□□ -1.16
HMGB1-203ENST00000341423 SLC15A4Q8N697 577 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 TCEAL2Q9H3H9 227 aaPredicted RBP7.8□□□□□ -1.16
HMGB1-203ENST00000341423 PTPN13Q12923 2485 aa7.8□□□□□ -1.16
HMGB1-203ENST00000341423 SLC22A31A6NKX4 558 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 ACOT8O14734 319 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 CASC3O15234 703 aaKnown RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 SUSD5O60279 629 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 KHDRBS3O75525 346 aaKnown RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 FOXH1O75593 365 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 EML2O95834 649 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 RAF1P04049 648 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 C2P06681 752 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 SLC1A6P48664 564 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 TSTQ16762 297 aaKnown RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 TMEM44Q2T9K0 475 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 LIPMQ5VYY2 423 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 Q71RC1 249 aaPredicted RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 OR2T6Q8NHC8 308 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 TMBIM1Q969X1 311 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 GPATCH1Q9BRR8 931 aaKnown RBP7.79□□□□□ -1.16
HMGB1-203ENST00000341423 XYLT2Q9H1B5 865 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 SLC6A15Q9H2J7 730 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 DMAC2Q9NW81 257 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 CMTM6Q9NX76 183 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 FOLR1P15328 257 aa7.79□□□□□ -1.16
HMGB1-203ENST00000341423 C4BPBP20851 252 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms