RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 EMX1Q04741 257 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-201ENST00000303395 CRMP1Q14194 572 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF345Q14585 488 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 SURF2Q15527 256 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-201ENST00000303395 EMC4Q5J8M3 183 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 NXNL2Q5VZ03 156 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 JAGN1Q8N5M9 183 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 C12orf29Q8N999 325 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 SEMA6DQ8NFY4 1073 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 RBPMSQ93062 196 aaKnown RBP4.96□□□□□ -1.62
SCN1A-201ENST00000303395 RNF170Q96K19 258 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 SLC29A1Q99808 456 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 GPATCH2LQ9NWQ4 482 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 SCN9AQ15858 1988 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 LRIT2A6NDA9 550 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 NEMP2A6NFY4 417 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 ANKRD66B4E2M5 251 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 GPR39O43194 453 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 OR2T1O43869 369 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 SDC3O75056 442 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 LCKP06239 509 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 PRSS3P35030 304 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF84P51523 738 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 FGL2Q14314 439 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 LRRC26Q2I0M4 334 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 UNC50Q53HI1 259 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 FAHD1Q6P587 224 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 BCORQ6W2J9 1755 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 SLC24A5Q71RS6 500 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 CCDC190Q86UF4 302 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 FAM129CQ86XR2 697 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF676Q8N7Q3 588 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 CLRN3Q8NCR9 226 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 DYNC2LI1Q8TCX1 351 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 GLYATL2Q8WU03 294 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 FAM46BQ96A09 425 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 HINT2Q9BX68 163 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 ARL6Q9H0F7 186 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 SPON1Q9HCB6 807 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 WASH6PQ9NQA3 447 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 SLC35A3Q9Y2D2 325 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 USP3Q9Y6I4 520 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 NPEPPSL1A6NEC2 478 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 IGLON5A6NGN9 336 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 B4GAT1O43505 415 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 OR4F21O95013 312 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 AHSA1O95433 338 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 ARSBP15848 533 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 EPHX2P34913 555 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 AGFG1P52594 562 aaKnown RBP4.96□□□□□ -1.62
SCN1A-201ENST00000303395 GDF10P55107 478 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 CLDN20P56880 219 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 TAS2R20P59543 309 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 RBPJQ06330 500 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF460Q14592 562 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 AAK1Q2M2I8 961 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 NOMO2Q5JPE7 1267 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM201Q5SNT2 666 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 CATSPEREQ5SY80 951 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF852Q6ZMS4 543 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 DBF4BQ8NFT6 615 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 OR51L1Q8NGJ5 315 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 NANOS1Q8WY41 292 aaKnown RBP4.96□□□□□ -1.62
SCN1A-201ENST00000303395 GMPPAQ96IJ6 420 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-201ENST00000303395 BARD1Q99728 777 aaKnown RBP4.96□□□□□ -1.62
SCN1A-201ENST00000303395 EDEM2Q9BV94 578 aa4.96□□□□□ -1.62
SCN1A-201ENST00000303395 TCEAL2Q9H3H9 227 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-201ENST00000303395 TRAV1-2A0A0B4J238 106 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TCRBV5S1A1TA0A578 114 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 RNF212BA8MTL3 300 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 UMAD1C9J7I0 102 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CTDSPLO15194 276 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CACNG3O60359 315 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 JTBO76095 146 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 MBP02144 154 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TPOP07202 933 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ASCL1P50553 236 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GPR157Q5UAW9 335 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 LCTLQ6UWM7 567 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GALNT10Q86SR1 603 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 AQP11Q8NBQ7 271 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 PPP1R35Q8TAP8 253 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CORO2AQ92828 525 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CCDC74AQ96AQ1 378 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 DCLRE1CQ96SD1 692 aaKnown RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ADAM33Q9BZ11 813 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 NWD2Q9ULI1 1742 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 A6NCN8 305 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 RNASEK-C17orf49H0YIS7 233 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CIDEAO60543 219 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 KCNK2O95069 426 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CD3GP09693 182 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CREB1P16220 341 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 MGMTP16455 207 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM115Q12893 351 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 CPSF6Q16630 551 aaKnown RBP eCLIP4.95□□□□□ -1.62
SCN1A-201ENST00000303395 ISXQ2M1V0 245 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 GOLGA7Q7Z5G4 137 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM200AQ86VY9 491 aa4.95□□□□□ -1.62
SCN1A-201ENST00000303395 METTL4Q8N3J2 472 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms