RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SPRYD4Q8WW59 207 aaPredicted RBP18.6■□□□□ 0.57
VPS53-201ENST00000291074 CNOT9Q92600 299 aaKnown RBP18.6■□□□□ 0.57
VPS53-201ENST00000291074 CTHRC1Q96CG8 243 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 KATNB1Q9BVA0 655 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 TBC1D17Q9HA65 648 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 MED17Q9NVC6 651 aa18.6■□□□□ 0.57
VPS53-201ENST00000291074 FAM221BA6H8Z2 402 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 HRKO00198 91 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 BRINP1O60477 761 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 GABRA5P31644 462 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 DEFA1P59665 94 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 DEFA3P59666 94 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 KIAA0895LQ68EN5 471 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 FCRLBQ6BAA4 426 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 CAMKK1Q8N5S9 505 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 FAM160A2Q8N612 972 aaPredicted RBP18.59■□□□□ 0.57
VPS53-201ENST00000291074 SLX1AQ9BQ83 275 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 TIGARQ9NQ88 270 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 HCN3Q9P1Z3 774 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 LAMA1P25391 3075 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 LINC00854A0A1B0GVQ3 168 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 OR2W5A6NFC9 320 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 C10orf142B7Z368 130 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 CHST10O43529 356 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 OR10H2O60403 315 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 ADAM11O75078 769 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 CELP19835 753 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 TBXA2RP21731 343 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 RAB38P57729 211 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 SELENBP1Q13228 472 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 DSG2Q14126 1118 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 PDZK1Q5T2W1 519 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 VWA5B2Q8N398 1253 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 PTCHD1Q96NR3 888 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 CD180Q99467 661 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 TBX5Q99593 518 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 HDHD5Q9BXW7 423 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 SIAEQ9HAT2 523 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 KRCC1Q9NPI7 259 aaPredicted RBP18.59■□□□□ 0.57
VPS53-201ENST00000291074 TRPV5Q9NQA5 729 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 H2AFY2Q9P0M6 372 aaPredicted RBP18.59■□□□□ 0.57
VPS53-201ENST00000291074 TRAPPC4Q9Y296 219 aa18.59■□□□□ 0.57
VPS53-201ENST00000291074 EXOGQ9Y2C4 368 aaKnown RBP18.59■□□□□ 0.57
VPS53-201ENST00000291074 A0A0A6YYC8 382 aaPredicted RBP18.58■□□□□ 0.57
VPS53-201ENST00000291074 A0A1W2PQL4 384 aaPredicted RBP18.58■□□□□ 0.57
VPS53-201ENST00000291074 TGFBR3LH3BV60 316 aa18.58■□□□□ 0.57
VPS53-201ENST00000291074 I3L1I5 382 aaPredicted RBP18.58■□□□□ 0.57
VPS53-201ENST00000291074 RFPL3O75679 317 aa18.58■□□□□ 0.57
VPS53-201ENST00000291074 HMGN1P05114 100 aa18.58■□□□□ 0.57
VPS53-201ENST00000291074 SLC9A3P48764 834 aa18.58■□□□□ 0.57
VPS53-201ENST00000291074 CLDN22Q8N7P3 220 aa18.58■□□□□ 0.57
VPS53-201ENST00000291074 BRIX1Q8TDN6 353 aaKnown RBP18.58■□□□□ 0.57
VPS53-201ENST00000291074 RLN3Q8WXF3 142 aa18.58■□□□□ 0.57
VPS53-201ENST00000291074 HS6ST2Q96MM7 605 aa18.58■□□□□ 0.57
VPS53-201ENST00000291074 WDFY2Q96P53 400 aa18.58■□□□□ 0.57
VPS53-201ENST00000291074 ISG20L2Q9H9L3 353 aaKnown RBP18.58■□□□□ 0.57
VPS53-201ENST00000291074 ISYNA1Q9NPH2 558 aa18.58■□□□□ 0.57
VPS53-201ENST00000291074 MYO15AQ9UKN7 3530 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 TRAV27A0A087WT01 109 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 BHLHE40O14503 412 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 IGHA1P01876 353 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 EMDP50402 254 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 MAZP56270 477 aaKnown RBP18.58■□□□□ 0.56
VPS53-201ENST00000291074 FZD5Q13467 585 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 KLHL36Q8N4N3 616 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 ZDHHC1Q8WTX9 485 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 ART5Q96L15 291 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 SRRQ9GZT4 340 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 MEPEQ9NQ76 525 aaPredicted RBP18.58■□□□□ 0.56
VPS53-201ENST00000291074 TNFRSF10DQ9UBN6 386 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 POMT2Q9UKY4 750 aa18.58■□□□□ 0.56
VPS53-201ENST00000291074 DVL2O14641 736 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 MANEAQ5SRI9 462 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 ARMC6Q6NXE6 501 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 NIPAL3Q6P499 406 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 KLBQ86Z14 1044 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 OR52L1Q8NGH7 329 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 BPIFA2Q96DR5 249 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 DTX4Q9Y2E6 619 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 OR5K4A6NMS3 321 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 IGKV1D-16P01601 117 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 SAGP10523 405 aaPredicted RBP18.57■□□□□ 0.56
VPS53-201ENST00000291074 SSTR4P31391 388 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 MAT1AQ00266 395 aaKnown RBP18.57■□□□□ 0.56
VPS53-201ENST00000291074 PSG6Q00889 435 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 CSTF1Q05048 431 aaKnown RBP18.57■□□□□ 0.56
VPS53-201ENST00000291074 ERV3-1Q14264 604 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 TAB1Q15750 504 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 TMEM44Q2T9K0 475 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 VASNQ6EMK4 673 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 ZCCHC12Q6PEW1 402 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 NECTIN4Q96NY8 510 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 SEMA6CQ9H3T2 930 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 FLRT3Q9NZU0 649 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 MN1Q10571 1320 aaPredicted RBP18.57■□□□□ 0.56
VPS53-201ENST00000291074 SHISA3A0PJX4 238 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 SLC9B1P1A6NJY1 282 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 NCR1O76036 304 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 NKX2-2O95096 273 aa18.57■□□□□ 0.56
VPS53-201ENST00000291074 NNATQ16517 81 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms