RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 GATSQ8NAP1 163 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 NUDT8Q8WV74 236 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 OR5P2Q8WZ92 322 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 ZBTB8AQ96BR9 441 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 COQ8BQ96D53 544 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 OTUB1Q96FW1 271 aaPredicted RBP8.73□□□□□ -1.01
VPS41-201ENST00000265745 ADGRG7Q96K78 797 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 STACQ99469 402 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 NPAS1Q99742 590 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 KLHDC3Q9BQ90 382 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 TMEM109Q9BVC6 243 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 BTBD2Q9BX70 525 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 PIGUQ9H490 435 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 ZCCHC3Q9NUD5 404 aaKnown RBP8.73□□□□□ -1.01
VPS41-201ENST00000265745 MED17Q9NVC6 651 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 GPATCH2Q9NW75 528 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 KLHL28Q9NXS3 571 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 ZDHHC2Q9UIJ5 367 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 ACANP16112 2415 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 MPDZO75970 2070 aa8.73□□□□□ -1.01
VPS41-201ENST00000265745 MAP1AP78559 2803 aaPredicted RBP8.72□□□□□ -1.01
VPS41-201ENST00000265745 FREM3P0C091 2139 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 KIAA1549Q9HCM3 1950 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 A0A1W2PQD3 144 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 DEFB108AA8MXU0 73 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 SCDO00767 359 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 TYROBPO43914 113 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 SOX30O94993 753 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 OPN1LWP04000 364 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 LINGO3P0C6S8 592 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 FCGR2AP12318 317 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 POU2F1P14859 743 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 CD53P19397 219 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 IL11P20809 199 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 CCKARP32238 428 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 RAC1P63000 192 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 PPP2R2AP63151 447 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 POU6F2P78424 691 aaPredicted RBP8.72□□□□□ -1.01
VPS41-201ENST00000265745 FOXD4Q12950 439 aaPredicted RBP8.72□□□□□ -1.01
VPS41-201ENST00000265745 CD226Q15762 336 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 PLPPR5Q32ZL2 321 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 KLHL26Q53HC5 615 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 CDC73Q6P1J9 531 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 WDR93Q6P2C0 686 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 C22orf34Q6ZV56 151 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 MISPQ8IVT2 679 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 RIMKLAQ8IXN7 391 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 FNDC5Q8NAU1 212 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 OR10D3Q8NH80 312 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 B4GALNT2Q8NHY0 566 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 POC1BQ8TC44 478 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 JADE3Q92613 823 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 CDS1Q92903 461 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 PRPF18Q99633 342 aaKnown RBP8.72□□□□□ -1.01
VPS41-201ENST00000265745 C1orf50Q9BV19 199 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 CXorf36Q9H7Y0 433 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 DLL4Q9NR61 685 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 PLSCR4Q9NRQ2 329 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 C6orf203Q9P0P8 240 aaPredicted RBP8.72□□□□□ -1.01
VPS41-201ENST00000265745 EIF3LQ9Y262 564 aaKnown RBP8.72□□□□□ -1.01
VPS41-201ENST00000265745 SNX8Q9Y5X2 465 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 MED13LQ71F56 2210 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 NF1P21359 2839 aa8.72□□□□□ -1.01
VPS41-201ENST00000265745 A0A0J9YW62 118 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 C6orf47O95873 294 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 G6PDP11413 515 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 FOSL1P15407 271 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 CRYGSP22914 178 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 HOXC12P31275 282 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 KCNJ5P48544 419 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 ZNF41P51814 821 aaPredicted RBP8.71□□□□□ -1.02
VPS41-201ENST00000265745 C21orf58P58505 322 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 EMX2Q04743 252 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 LSM12Q3MHD2 195 aaKnown RBP8.71□□□□□ -1.02
VPS41-201ENST00000265745 ESPNLQ6ZVH7 1005 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 MTERF4Q7Z6M4 381 aaKnown RBP8.71□□□□□ -1.02
VPS41-201ENST00000265745 NUDCD3Q8IVD9 361 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 WFDC11Q8NEX6 87 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 OR56A1Q8NGH5 318 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 ADAMTS15Q8TE58 950 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 OSTF1Q92882 214 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 CAVIN3Q969G5 261 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 TUBGCP3Q96CW5 907 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 CHMP6Q96FZ7 201 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 SH3YL1Q96HL8 342 aaPredicted RBP8.71□□□□□ -1.02
VPS41-201ENST00000265745 GMPPAQ96IJ6 420 aaPredicted RBP8.71□□□□□ -1.02
VPS41-201ENST00000265745 MARK4Q96L34 752 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 RNF145Q96MT1 663 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 MED18Q9BUE0 208 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 ACTRT3Q9BYD9 372 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 PRRG4Q9BZD6 226 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 BHLHE41Q9C0J9 482 aaPredicted RBP8.71□□□□□ -1.02
VPS41-201ENST00000265745 HOXD1Q9GZZ0 328 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 ATAD3AQ9NVI7 634 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 PAQR5Q9NXK6 330 aaPredicted RBP8.71□□□□□ -1.02
VPS41-201ENST00000265745 ZNF226Q9NYT6 803 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 MCTS1Q9ULC4 181 aaKnown RBP8.71□□□□□ -1.02
VPS41-201ENST00000265745 FAF1Q9UNN5 650 aaPredicted RBP8.71□□□□□ -1.02
VPS41-201ENST00000265745 PROCRQ9UNN8 238 aa8.71□□□□□ -1.02
VPS41-201ENST00000265745 KCNE3Q9Y6H6 103 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms