RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 YY2O15391 372 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 ENSAO43768 121 aaKnown RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 THAP3Q8WTV1 239 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 DYNLRB1Q9NP97 96 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 COQ4Q9Y3A0 265 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 ACTL7AQ9Y615 435 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 A0A087WZY1 265 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 LYPLA2O95372 231 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 CD48P09326 243 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 OR8U8P0C7N1 319 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 POLR2CP19387 275 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 TIA1P31483 386 aaKnown RBP eCLIP13.19□□□□□ -0.31e-7■■■■□ 25.2
CCDC88A-201ENST00000263630 PPP2CAP67775 309 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 SLC22A6Q4U2R8 563 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 SMIM12Q96EX1 92 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 AGXT2Q9BYV1 514 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 RYDENQ9NUL5 291 aaKnown RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 PRDM4Q9UKN5 801 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 KIF1AQ12756 1690 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 DDNO94850 711 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 CBX7O95931 251 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 THAP7Q9BT49 309 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 NT5DC2Q9H857 520 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 ATXN7L1Q9ULK2 861 aaPredicted RBP13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 UGDHO60701 494 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 NSDHLQ15738 373 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 OR1S2Q8NGQ3 325 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 DPEP3Q9H4B8 488 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 SEC14L5O43304 696 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 INHAP05111 366 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 SMIM17P0DL12 118 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 GABRA4P48169 554 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 SLC46A3Q7Z3Q1 461 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 TMEM200AQ86VY9 491 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 LFNGQ8NES3 379 aa13.19□□□□□ -0.3
CCDC88A-201ENST00000263630 SUMO1P63165 101 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 VAMP3Q15836 100 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 SUSD1Q6UWL2 747 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 TXNDC5Q8NBS9 432 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 MTHFD2LQ9H903 347 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 CLDN6P56747 220 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 PLBD1Q6P4A8 553 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 METAP1DQ6UB28 335 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 C1orf87Q8N0U7 546 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 UGT2A1Q9Y4X1 527 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 HIDE1A8MVS5 230 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 CLDN7O95471 211 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 PROX2Q3B8N5 592 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 METTL27Q8N6F8 245 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 FBXW5Q969U6 566 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 CCNL2Q96S94 520 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 MYADMQ96S97 322 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 ANKRD19PQ9H560 264 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 RDH14Q9HBH5 336 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 SLC22A11Q9NSA0 550 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 EHFQ9NZC4 300 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 FOLR1P15328 257 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 AADACP22760 399 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 BRIX1Q8TDN6 353 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 IRF7Q92985 503 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 TCRBV5S4A2TA0A5A2 114 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 STSP08842 583 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 ZNF44P15621 663 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 GABRA2P47869 451 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 ATP1B3P54709 279 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 TRMT10BQ6PF06 316 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 LRRC28Q86X40 367 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 HPSE2Q8WWQ2 592 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 SLC2A13Q96QE2 648 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 OR5B2Q96R09 309 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 ARPC5LQ9BPX5 153 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 TUSC2O75896 110 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 MT-ND4P03905 459 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 JUNDP17535 347 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 TAGLN2P37802 199 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 JAM2P57087 298 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 NAT8LQ8N9F0 302 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 A0A1W2PRU2 124 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 MEIS3P2A8K0S8 358 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 BMXP51813 675 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 TMEM115Q12893 351 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 GPM6BQ13491 265 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 EIF4HQ15056 248 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 PIM3Q86V86 326 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 NIPAL2Q9H841 368 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 FAM159BA6NKW6 160 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 RAB40ALP0C0E4 278 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 SUB1P53999 127 aaKnown RBP eCLIP13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 SIGLECL1Q8N7X8 197 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 RAB40AQ8WXH6 277 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 LIN7BQ9HAP6 207 aa13.18□□□□□ -0.3
CCDC88A-201ENST00000263630 TNK1Q13470 666 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 OR4C5Q8NGB2 326 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 SMIM3Q9BZL3 60 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 IQGAP1P46940 1657 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 SHEQ5VZ18 495 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 PRSS55Q6UWB4 352 aaPredicted RBP13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 SERPINA11Q86U17 422 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 SPARTQ8N0X7 666 aa13.17□□□□□ -0.3
CCDC88A-201ENST00000263630 CSNK1A1LQ8N752 337 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms