RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 NLKQ9UBE8 527 aa18■□□□□ 0.47
UPF1-201ENST00000262803 ZNF337Q9Y3M9 751 aa18■□□□□ 0.47
UPF1-201ENST00000262803 USP3Q9Y6I4 520 aa18■□□□□ 0.47
UPF1-201ENST00000262803 PLSCR5A0PG75 271 aa18■□□□□ 0.47
UPF1-201ENST00000262803 B4GAT1O43505 415 aa18■□□□□ 0.47
UPF1-201ENST00000262803 HTR3BO95264 441 aa18■□□□□ 0.47
UPF1-201ENST00000262803 DCST2Q5T1A1 773 aa18■□□□□ 0.47
UPF1-201ENST00000262803 LIPIQ6XZB0 460 aa18■□□□□ 0.47
UPF1-201ENST00000262803 OR52E1Q8NGJ3 308 aa18■□□□□ 0.47
UPF1-201ENST00000262803 HHIPL1Q96JK4 782 aa18■□□□□ 0.47
UPF1-201ENST00000262803 CUTCQ9NTM9 273 aa18■□□□□ 0.47
UPF1-201ENST00000262803 SLC39A1Q9NY26 324 aa18■□□□□ 0.47
UPF1-201ENST00000262803 OR5K3A6NET4 321 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 H7C2Y5 167 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 PRSS3P35030 304 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 ZNF610Q8N9Z0 462 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 AGBL5Q8NDL9 886 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 VN1R2Q8NFZ6 395 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 NDNFQ8TB73 568 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 CACNG6Q9BXT2 260 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 LINC00597Q9H2U6 94 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 ACSS1Q9NUB1 689 aaPredicted RBP17.99■□□□□ 0.47
UPF1-201ENST00000262803 B3GNT3Q9Y2A9 372 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 URB1O60287 2271 aaKnown RBP17.99■□□□□ 0.47
UPF1-201ENST00000262803 EGFP01133 1207 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 PKLRP30613 574 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 VASPP50552 380 aaPredicted RBP17.99■□□□□ 0.47
UPF1-201ENST00000262803 WNT4P56705 351 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 IRF4Q15306 451 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 PIWIL3Q7Z3Z3 882 aaKnown RBP17.99■□□□□ 0.47
UPF1-201ENST00000262803 SPARTQ8N0X7 666 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 HLA-CQ95604 372 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 GORASP2Q9H8Y8 452 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 SLC7A7Q9UM01 511 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 NSG1A0A0A6YYJ2 146 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 SDC3O75056 442 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 FUT1P19526 365 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 NTHL1P78549 312 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 CLVS2Q5SYC1 327 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 CSNK2A3Q8NEV1 391 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 OR51T1Q8NGJ9 327 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 NEIL2Q969S2 332 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 DNAJB11Q9UBS4 358 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 NARSO43776 548 aaKnown RBP17.99■□□□□ 0.47
UPF1-201ENST00000262803 PPP1R3DO95685 299 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 ALDOBP05062 364 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 F3P13726 295 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 GPR176Q14439 515 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 HAGHLQ6PII5 290 aaPredicted RBP17.99■□□□□ 0.47
UPF1-201ENST00000262803 TMEM184AQ6ZMB5 413 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 MAFIPQ8WZ33 124 aa17.99■□□□□ 0.47
UPF1-201ENST00000262803 MSI2Q96DH6 328 aaKnown RBP17.99■□□□□ 0.47
UPF1-201ENST00000262803 ZBED3Q96IU2 234 aaPredicted RBP17.99■□□□□ 0.47
UPF1-201ENST00000262803 A0A1W2PQL4 384 aaPredicted RBP17.98■□□□□ 0.47
UPF1-201ENST00000262803 GPR39O43194 453 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 CD40LGP29965 261 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 ZNF534Q76KX8 674 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 KCTD20Q7Z5Y7 419 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 TMEM150AQ86TG1 271 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 ACOT4Q8N9L9 421 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 STEAP2Q8NFT2 490 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 MAELQ96JY0 434 aaKnown RBP17.98■□□□□ 0.47
UPF1-201ENST00000262803 INTS14Q96SY0 518 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 TMEM185BQ9H7F4 350 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 TESQ9UGI8 421 aaKnown RBP17.98■□□□□ 0.47
UPF1-201ENST00000262803 MAS1P04201 325 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 TAS2R20P59543 309 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 FAM83HQ6ZRV2 1179 aaPredicted RBP17.98■□□□□ 0.47
UPF1-201ENST00000262803 SGPP2Q8IWX5 399 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 SYNPOQ8N3V7 929 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 SYT14Q8NB59 555 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 MFSD9Q8NBP5 474 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 OR14K1Q8NGZ2 314 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 CPNE5Q9HCH3 593 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 CPNE7Q9UBL6 633 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 ENPP5Q9UJA9 477 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 PCDHGA8Q9Y5G5 932 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 MYO9BQ13459 2157 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 RAB40BQ12829 278 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 FAM69AQ5T7M9 428 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 LILRB2Q8N423 598 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 C1QTNF2Q9BXJ5 285 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 UBQLN4Q9NRR5 601 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 TAS2R3Q9NYW6 316 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 CBLCQ9ULV8 474 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 FUOMA2VDF0 154 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 GDF1P27539 372 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 XCR1P46094 333 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 PARS2Q7L3T8 475 aaKnown RBP17.98■□□□□ 0.47
UPF1-201ENST00000262803 RSC1A1Q92681 617 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 SMIM14Q96QK8 99 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 TMEM100Q9NV29 134 aa17.98■□□□□ 0.47
UPF1-201ENST00000262803 ZBTB42B2RXF5 422 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 TIMP2P16035 220 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 RGRP47804 291 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 ATP1B3P54709 279 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 OR5D14Q8NGL3 314 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 PCDHB10Q9UN67 800 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 RDH16O75452 317 aa17.97■□□□□ 0.47
UPF1-201ENST00000262803 IGHG1P01857 330 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms