RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 SLC41A3Q96GZ6 507 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 PPP1R16AQ96I34 528 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 CAMK1GQ96NX5 476 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 ZNF649Q9BS31 505 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 MED18Q9BUE0 208 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 PINK1Q9BXM7 581 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 CCDC86Q9H6F5 360 aaKnown RBP9.36□□□□□ -0.91
LIG3-201ENST00000262327 SLC6A20Q9NP91 592 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 MRPS30Q9NP92 439 aaKnown RBP9.36□□□□□ -0.91
LIG3-201ENST00000262327 PRDM7Q9NQW5 492 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 CLDND1Q9NY35 253 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 ZNF624Q9P2J8 865 aaPredicted RBP9.36□□□□□ -0.91
LIG3-201ENST00000262327 DEC1Q9P2X7 70 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 APOBEC3BQ9UH17 382 aaKnown RBP9.36□□□□□ -0.91
LIG3-201ENST00000262327 FBXL4Q9UKA2 621 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 NUP50Q9UKX7 468 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 F5P12259 2224 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 ALPK2Q86TB3 2170 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 A0A0G2JPF8 293 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 TEX51A0A1B0GUA7 166 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 HNRNPCL2B2RXH8 293 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 HNRNPCL3B7ZW38 293 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 FAM157BP0CG42 384 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 HNRNPCL4P0DMR1 293 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 ATP5A1P25705 553 aaKnown RBP9.36□□□□□ -0.91
LIG3-201ENST00000262327 MAT2AP31153 395 aaKnown RBP9.36□□□□□ -0.91
LIG3-201ENST00000262327 FGF9P31371 208 aaPredicted RBP9.36□□□□□ -0.91
LIG3-201ENST00000262327 HCCSP53701 268 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 E2F1Q01094 437 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 DPTQ07507 201 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 DSG2Q14126 1118 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 GPR176Q14439 515 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 FCN2Q15485 313 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 GAB4Q2WGN9 574 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 PGGHGQ32M88 737 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 SLC25A30Q5SVS4 291 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 ZNF322Q6U7Q0 402 aaPredicted RBP9.36□□□□□ -0.91
LIG3-201ENST00000262327 RASSF6Q6ZTQ3 369 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 MTSS1LQ765P7 747 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 CXXC5Q7LFL8 322 aaKnown RBP9.36□□□□□ -0.91
LIG3-201ENST00000262327 IL17RCQ8NAC3 791 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 BEST4Q8NFU0 473 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 ZCCHC10Q8TBK6 192 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 ZFAND1Q8TCF1 268 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 ADAMTS15Q8TE58 950 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 CDCP1Q9H5V8 836 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 C20orf141Q9NUB4 165 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 SLC23A1Q9UHI7 598 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 KIAA1549LQ6ZVL6 1849 aa9.36□□□□□ -0.91
LIG3-201ENST00000262327 ZNF860A6NHJ4 632 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 OR5K4A6NMS3 321 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 FAM25EA8MYX2 175 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 MID1O15344 667 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 SEC14L5O43304 696 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 ARHGEF9O43307 516 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 HCN1O60741 890 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 TRAPPC2P0DI81 140 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 TRAPPC2BP0DI82 140 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 CSNK2A2P19784 350 aaPredicted RBP9.35□□□□□ -0.91
LIG3-201ENST00000262327 HLA-DMAP28067 261 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 LTBRP36941 435 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 CLDN20P56880 219 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 RRAS2P62070 204 aaPredicted RBP9.35□□□□□ -0.91
LIG3-201ENST00000262327 MRPL28Q13084 256 aaKnown RBP9.35□□□□□ -0.91
LIG3-201ENST00000262327 ABHD17CQ6PCB6 329 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 CD200R1LQ6Q8B3 271 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 POGLUT1Q8NBL1 392 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 ELP4Q96EB1 424 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 SOSTQ9BQB4 213 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 ABCG5Q9H222 651 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 TTYH1Q9H313 450 aaPredicted RBP9.35□□□□□ -0.91
LIG3-201ENST00000262327 BCL2L10Q9HD36 194 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 ENAMQ9NRM1 1142 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 TMEM74BQ9NUR3 256 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 FBXO34Q9NWN3 711 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 ING3Q9NXR8 418 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 ZNF222Q9UK12 451 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 RASD1Q9Y272 281 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 EDDM13A0A1B0GTR0 161 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 FABP7O15540 132 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 TBX19O60806 448 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 ERGP11308 486 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 DRD2P14416 443 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 PAICSP22234 425 aaKnown RBP9.35□□□□□ -0.91
LIG3-201ENST00000262327 ERP29P30040 261 aaKnown RBP9.35□□□□□ -0.91
LIG3-201ENST00000262327 IFNGR2P38484 337 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 SRP54P61011 504 aaKnown RBP9.35□□□□□ -0.91
LIG3-201ENST00000262327 SIM1P81133 766 aaPredicted RBP9.35□□□□□ -0.91
LIG3-201ENST00000262327 DLX2Q07687 328 aaPredicted RBP9.35□□□□□ -0.91
LIG3-201ENST00000262327 RUNX3Q13761 415 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 SLC25A35Q3KQZ1 300 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 TOR2AQ5JU69 321 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 GPR135Q8IZ08 494 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 OR7G2Q8NG99 324 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 OR52E1Q8NGJ3 308 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 OR10Z1Q8NGY1 313 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 SUSD6Q92537 303 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 COX14Q96I36 57 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 ALG8Q9BVK2 526 aa9.35□□□□□ -0.91
LIG3-201ENST00000262327 UBQLN3Q9H347 655 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms