RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 CXCL16Q9H2A7 254 aa17.79■□□□□ 0.44
PTPRE-201ENST00000254667 OR52D1Q9H346 318 aa17.79■□□□□ 0.44
PTPRE-201ENST00000254667 ACAD8Q9UKU7 415 aa17.79■□□□□ 0.44
PTPRE-201ENST00000254667 INTS6Q9UL03 887 aaKnown RBP17.79■□□□□ 0.44
PTPRE-201ENST00000254667 HOXC11O43248 304 aaPredicted RBP17.79■□□□□ 0.44
PTPRE-201ENST00000254667 CHMP24386 653 aa17.79■□□□□ 0.44
PTPRE-201ENST00000254667 APLNRP35414 380 aa17.79■□□□□ 0.44
PTPRE-201ENST00000254667 PRKXP51817 358 aa17.79■□□□□ 0.44
PTPRE-201ENST00000254667 ZNF578Q96N58 590 aaPredicted RBP17.79■□□□□ 0.44
PTPRE-201ENST00000254667 CD93Q9NPY3 652 aa17.79■□□□□ 0.44
PTPRE-201ENST00000254667 RDH8Q9NYR8 311 aa17.79■□□□□ 0.44
PTPRE-201ENST00000254667 OR7A17O14581 309 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 IFNGR1P15260 489 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 FASLGP48023 281 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 TAP2Q03519 686 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 OR5H2Q8NGV7 314 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 TRMT10AQ8TBZ6 339 aaKnown RBP17.78■□□□□ 0.44
PTPRE-201ENST00000254667 RADILQ96JH8 1075 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 CPPED1Q9BRF8 314 aaPredicted RBP17.78■□□□□ 0.44
PTPRE-201ENST00000254667 CHRDQ9H2X0 955 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 THSD1Q9NS62 852 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 RPH3AQ9Y2J0 694 aaPredicted RBP17.78■□□□□ 0.44
PTPRE-201ENST00000254667 MYH15Q9Y2K3 1946 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 OR1Q1Q15612 314 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 TP53I3Q53FA7 332 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 PODNL1Q6PEZ8 512 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 RNF113BQ8IZP6 322 aaKnown RBP17.78■□□□□ 0.44
PTPRE-201ENST00000254667 ZFP57Q9NU63 452 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 EMC3Q9P0I2 261 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 MGAT4CQ9UBM8 478 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 HS3ST3A1Q9Y663 406 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 TSPAN4O14817 238 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 MAN2A2P49641 1150 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 BMXP51813 675 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 PIP5KL1Q5T9C9 394 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 TMEM244Q5VVB8 128 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 CCBE1Q6UXH8 406 aaPredicted RBP17.78■□□□□ 0.44
PTPRE-201ENST00000254667 RAB11FIP2Q7L804 512 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 ANKRD13BQ86YJ7 626 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 SDR9C7Q8NEX9 313 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 TMEM185BQ9H7F4 350 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 SCGB2A1O75556 95 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 EGFP01133 1207 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 DNASE1P24855 282 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 TGFBR3Q03167 851 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 C5orf46Q6UWT4 87 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 TMEM163Q8TC26 289 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 SLC7A13Q8TCU3 470 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 MCOLN1Q9GZU1 580 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 UBE2J1Q9Y385 318 aaPredicted RBP17.78■□□□□ 0.44
PTPRE-201ENST00000254667 ADAM18Q9Y3Q7 739 aa17.78■□□□□ 0.44
PTPRE-201ENST00000254667 MYH9P35579 1960 aaKnown RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 CPNE6O95741 557 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 POU3F2P20265 443 aaPredicted RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 CD40LGP29965 261 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 PRSS3P35030 304 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 LKAAEAR1Q8TD35 194 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 MYH4Q9Y623 1939 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 LOC102725191A0A1B0GVB3 256 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 SORBS2O94875 1100 aaKnown RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 ITGBL1O95965 494 aaPredicted RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 PTTG1O95997 202 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 LCKP06239 509 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 TSFMP43897 325 aaKnown RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 AFF3P51826 1226 aaKnown RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 PGGHGQ32M88 737 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 FCRLBQ6BAA4 426 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 MRPL21Q7Z2W9 205 aaKnown RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 OR51Q1Q8NH59 317 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 PPP1R35Q8TAP8 253 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 MYLIPQ8WY64 445 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 TMEM168Q9H0V1 697 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 TP63Q9H3D4 680 aaPredicted RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 NUP50Q9UKX7 468 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 CA5BQ9Y2D0 317 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 SIT1Q9Y3P8 196 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 SPEF1Q9Y4P9 236 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 M0R036 132 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 RAB3AP20336 220 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 MRPS10P82664 201 aaKnown RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 RTN4RL1Q86UN2 441 aaPredicted RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 MISPQ8IVT2 679 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 B3GNT7Q8NFL0 401 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 KHSRPQ92945 711 aaKnown RBP eCLIP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 ERVK13-1Q9NX77 482 aa17.77■□□□□ 0.44
PTPRE-201ENST00000254667 NXT1Q9UKK6 140 aaKnown RBP17.77■□□□□ 0.44
PTPRE-201ENST00000254667 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.77■□□□□ 0.43
PTPRE-201ENST00000254667 SLCO2B1O94956 709 aa17.77■□□□□ 0.43
PTPRE-201ENST00000254667 CDK1P06493 297 aa17.77■□□□□ 0.43
PTPRE-201ENST00000254667 SYPL1Q16563 259 aa17.77■□□□□ 0.43
PTPRE-201ENST00000254667 FRMPD2BQ6IN97 320 aa17.77■□□□□ 0.43
PTPRE-201ENST00000254667 TMEFF1Q8IYR6 380 aa17.77■□□□□ 0.43
PTPRE-201ENST00000254667 CHPT1Q8WUD6 406 aa17.77■□□□□ 0.43
PTPRE-201ENST00000254667 OR10A5Q9H207 317 aa17.77■□□□□ 0.43
PTPRE-201ENST00000254667 OR10A2Q9H208 303 aa17.77■□□□□ 0.43
PTPRE-201ENST00000254667 A0A1W2PQL4 384 aaPredicted RBP17.76■□□□□ 0.43
PTPRE-201ENST00000254667 F5H0A9 414 aaPredicted RBP17.76■□□□□ 0.43
PTPRE-201ENST00000254667 I3L521 148 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 ERVK-25P63136 954 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms