RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 FOLR3P41439 243 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 MRPL21Q7Z2W9 205 aaKnown RBP12.75□□□□□ -0.37
SF3A1-201ENST00000215793 DEDD2Q8WXF8 326 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 OR52D1Q9H346 318 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 HHLA2Q9UM44 414 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 CPNE6O95741 557 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 CAPNS1P04632 268 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 DPY19L2P1Q6NXN4 242 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 LILRB2Q8N423 598 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 FAM83FQ8NEG4 500 aaPredicted RBP12.75□□□□□ -0.37
SF3A1-201ENST00000215793 NDNFQ8TB73 568 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 CDS1Q92903 461 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 TOMM40LQ969M1 308 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 NT5C3BQ969T7 300 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 FOXRED1Q96CU9 486 aaPredicted RBP12.75□□□□□ -0.37
SF3A1-201ENST00000215793 C3orf30Q96M34 536 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 CASD1Q96PB1 797 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 MYADMQ96S97 322 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 PLEKHA3Q9HB20 300 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 HCFC1R1Q9NWW0 138 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 PCDHGA6Q9Y5G7 932 aa12.75□□□□□ -0.37
SF3A1-201ENST00000215793 SDK1Q7Z5N4 2213 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 A0A0U1RQS6 177 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 SORBS2O94875 1100 aaKnown RBP12.74□□□□□ -0.37
SF3A1-201ENST00000215793 KNG1P01042 644 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 ALDH3B2P48448 385 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 SRYQ05066 204 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 PRDX1Q06830 199 aaKnown RBP12.74□□□□□ -0.37
SF3A1-201ENST00000215793 RAB31Q13636 194 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 TBCEQ15813 527 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-201ENST00000215793 NKPD1Q17RQ9 610 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 FCRLBQ6BAA4 426 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 OR56B2PQ8NGI1 322 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 OR5D14Q8NGL3 314 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 TBC1D20Q96BZ9 403 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 SULT4A1Q9BR01 284 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 OR51E2Q9H255 320 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 LMAN1LQ9HAT1 526 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 ADAM29Q9UKF5 820 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 F5H5P2 479 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 GOSR2O14653 212 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 GPR75O95800 540 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 TFP02787 698 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 AKAIN1P0CW23 69 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 CEBPBP17676 345 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 BCL2A1Q16548 175 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 GCDHQ92947 438 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-201ENST00000215793 COQ10AQ96MF6 247 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 VDAC3Q9Y277 283 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 F5H5K5 113 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 FOXE1O00358 373 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-201ENST00000215793 TSPAN15O95858 294 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 MEF2DQ14814 521 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 HACD4Q5VWC8 232 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 DNAJC22Q8N4W6 341 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 PRRT1Q99946 306 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 RTP3Q9BQQ7 232 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 SORBS1Q9BX66 1292 aaKnown RBP12.74□□□□□ -0.37
SF3A1-201ENST00000215793 BTBD2Q9BX70 525 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 DDX31Q9H8H2 851 aaKnown RBP12.74□□□□□ -0.37
SF3A1-201ENST00000215793 PLEKHJ1Q9NW61 149 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 PLEK2Q9NYT0 353 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 ZNF337Q9Y3M9 751 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 C17orf113A0A1B0GUU1 675 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 A6NHS1 94 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 MT-CO2P00403 227 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 SERPINE2P07093 398 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 MSX1P28360 303 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 RGS6P49758 472 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 CAV2P51636 162 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 OR7G2Q8NG99 324 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 SLC2A12Q8TD20 617 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 CLSTN3Q9BQT9 956 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 THAP7Q9BT49 309 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-201ENST00000215793 BABAM2Q9NXR7 383 aa12.74□□□□□ -0.37
SF3A1-201ENST00000215793 MCTS1Q9ULC4 181 aaKnown RBP12.74□□□□□ -0.37
SF3A1-201ENST00000215793 PPP6CO00743 305 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 TP53P04637 393 aaPredicted RBP12.73□□□□□ -0.37
SF3A1-201ENST00000215793 DCAF7P61962 342 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 PGGHGQ32M88 737 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 ZNF765Q7L2R6 523 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 ZNF695Q8IW36 515 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 OR52R1Q8NGF1 315 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 TMEM163Q8TC26 289 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 C22orf15Q8WYQ4 148 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 ARL11Q969Q4 196 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 ELMOD3Q96FG2 381 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 OR10A5Q9H207 317 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 OR10A2Q9H208 303 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 UBQLN4Q9NRR5 601 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 CD207Q9UJ71 328 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 V9GY05 133 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 ARPC5O15511 151 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 ERVK-25P63136 954 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 TGFBR3Q03167 851 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 TMEM53Q6P2H8 277 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 ZNF322Q6U7Q0 402 aaPredicted RBP12.73□□□□□ -0.37
SF3A1-201ENST00000215793 MRPL43Q8N983 215 aaKnown RBP12.73□□□□□ -0.37
SF3A1-201ENST00000215793 ITFG2Q969R8 447 aa12.73□□□□□ -0.37
SF3A1-201ENST00000215793 PFDN5Q99471 154 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms