RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 PIGQQ9BRB3 760 aa15.96■□□□□ 0.15
PNKP-230ENST00000638016 RBM24Q9BX46 236 aaKnown RBP15.96■□□□□ 0.15
PNKP-230ENST00000638016 TMEM185BQ9H7F4 350 aa15.96■□□□□ 0.15
PNKP-230ENST00000638016 UBQLN4Q9NRR5 601 aa15.96■□□□□ 0.15
PNKP-230ENST00000638016 MED17Q9NVC6 651 aa15.96■□□□□ 0.15
PNKP-230ENST00000638016 MARCOQ9UEW3 520 aaPredicted RBP15.96■□□□□ 0.15
PNKP-230ENST00000638016 HAO1Q9UJM8 370 aa15.96■□□□□ 0.15
PNKP-230ENST00000638016 ACTL7BQ9Y614 415 aa15.96■□□□□ 0.15
PNKP-230ENST00000638016 CENPVL1A0A0U1RR11 272 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 SCDO00767 359 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 ANKRD28O15084 1053 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 AQP8O94778 261 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 ALDOCP09972 364 aaKnown RBP15.95■□□□□ 0.14
PNKP-230ENST00000638016 DDX5P17844 614 aaKnown RBP15.95■□□□□ 0.14
PNKP-230ENST00000638016 SLC6A8P48029 635 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 ZNF117Q03924 483 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 MAD2L1Q13257 205 aaPredicted RBP15.95■□□□□ 0.14
PNKP-230ENST00000638016 PON3Q15166 354 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 PLPPR5Q32ZL2 321 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 LSM12Q3MHD2 195 aaKnown RBP15.95■□□□□ 0.14
PNKP-230ENST00000638016 HHATQ5VTY9 493 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 CBLN3Q6UW01 205 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 CHMP1BQ7LBR1 199 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 CNEP1R1Q8N9A8 125 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 SFXN5Q8TD22 340 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 TEX37Q96LM6 180 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 RNF145Q96MT1 663 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 PRPF18Q99633 342 aaKnown RBP15.95■□□□□ 0.14
PNKP-230ENST00000638016 NEUROD4Q9HD90 331 aa15.95■□□□□ 0.14
PNKP-230ENST00000638016 DNAJB12Q9NXW2 375 aaKnown RBP15.95■□□□□ 0.14
PNKP-230ENST00000638016 FAF1Q9UNN5 650 aaPredicted RBP15.95■□□□□ 0.14
PNKP-230ENST00000638016 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.95■□□□□ 0.14
PNKP-230ENST00000638016 RNF103-CHMP3A0A140T963 221 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 TUBAL3A6NHL2 446 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 SDHDO14521 159 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 EIF1AYO14602 144 aaKnown RBP15.94■□□□□ 0.14
PNKP-230ENST00000638016 SCN2BO60939 215 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 TNFRSF21O75509 655 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 SMNDC1O75940 238 aaKnown RBP eCLIP15.94■□□□□ 0.14
PNKP-230ENST00000638016 HPGDP15428 266 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 PSMA4P25789 261 aaKnown RBP15.94■□□□□ 0.14
PNKP-230ENST00000638016 SHC1P29353 583 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 CPOXP36551 454 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 CPA2P48052 419 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 TESK1Q15569 626 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 CTU2Q2VPK5 515 aaKnown RBP15.94■□□□□ 0.14
PNKP-230ENST00000638016 SPANXN4Q5MJ08 99 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 PPP4R4Q6NUP7 873 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 BTLAQ7Z6A9 289 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 ZNF614Q8N883 585 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 OR4A15Q8NGL6 344 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 PHOSPHO1Q8TCT1 267 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 STARD4Q96DR4 205 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 ZFP3Q96NJ6 502 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 POLDIP3Q9BY77 421 aaKnown RBP15.94■□□□□ 0.14
PNKP-230ENST00000638016 DPY30Q9C005 99 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 OPN3Q9H1Y3 402 aaPredicted RBP15.94■□□□□ 0.14
PNKP-230ENST00000638016 WDR55Q9H6Y2 383 aaPredicted RBP15.94■□□□□ 0.14
PNKP-230ENST00000638016 MEAF6Q9HAF1 191 aa15.94■□□□□ 0.14
PNKP-230ENST00000638016 HIVEP1P15822 2718 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 GOLGA8QA0A0J9YX86 632 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 A0A1W2PQD3 144 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 FAM221AA4D161 298 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 GOLGA8OA6NCC3 632 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 A6NNC1 897 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 GOLGA8NF8WBI6 632 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 CPSF4O95639 269 aaKnown RBP15.93■□□□□ 0.14
PNKP-230ENST00000638016 KITP10721 976 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 LBPP18428 481 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 ATP6V1C1P21283 382 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 DNAJA1P31689 397 aaKnown RBP15.93■□□□□ 0.14
PNKP-230ENST00000638016 KIR2DL2P43627 348 aaPredicted RBP15.93■□□□□ 0.14
PNKP-230ENST00000638016 EIF1AXP47813 144 aaKnown RBP15.93■□□□□ 0.14
PNKP-230ENST00000638016 MAGOHP61326 146 aaKnown RBP15.93■□□□□ 0.14
PNKP-230ENST00000638016 FOXF1Q12946 379 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 POU4F3Q15319 338 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 TOMM34Q15785 309 aaPredicted RBP15.93■□□□□ 0.14
PNKP-230ENST00000638016 SMU1Q2TAY7 513 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 BEND6Q5SZJ8 279 aaPredicted RBP15.93■□□□□ 0.14
PNKP-230ENST00000638016 C6orf120Q7Z4R8 191 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 METTL25Q8N6Q8 603 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 B4GALNT2Q8NHY0 566 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 FAM222BQ8WU58 562 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 LRRC46Q96FV0 321 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 CLEC4MQ9H2X3 399 aaPredicted RBP15.93■□□□□ 0.14
PNKP-230ENST00000638016 RASSF1Q9NS23 344 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 KCNE5Q9UJ90 142 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 FOXD3Q9UJU5 478 aaPredicted RBP15.93■□□□□ 0.14
PNKP-230ENST00000638016 PACSIN3Q9UKS6 424 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 CLEC4AQ9UMR7 237 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 CARD8Q9Y2G2 431 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 AP4B1Q9Y6B7 739 aa15.93■□□□□ 0.14
PNKP-230ENST00000638016 PRRC2AP48634 2157 aaKnown RBP15.93■□□□□ 0.14
PNKP-230ENST00000638016 MED13LQ71F56 2210 aa15.92■□□□□ 0.14
PNKP-230ENST00000638016 A8MXE2 369 aa15.92■□□□□ 0.14
PNKP-230ENST00000638016 NPIPB9F8W1W9 429 aa15.92■□□□□ 0.14
PNKP-230ENST00000638016 RNASET2O00584 256 aaKnown RBP15.92■□□□□ 0.14
PNKP-230ENST00000638016 MATN1P21941 496 aa15.92■□□□□ 0.14
PNKP-230ENST00000638016 IL12AP29459 219 aa15.92■□□□□ 0.14
PNKP-230ENST00000638016 ZNF41P51814 821 aaPredicted RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms