RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 NGFRP08138 427 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 THRBP10828 461 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 PRG2P13727 222 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 F8A1P23610 371 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 ELAVL4P26378 380 aaKnown RBP16.94■□□□□ 0.3
CLN3-254ENST00000637050 CD82P27701 267 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 DLSTP36957 453 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 ENTPD8Q5MY95 495 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 FNDC7Q5VTL7 733 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 KDM4DQ6B0I6 523 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 RANBP3LQ86VV4 465 aaPredicted RBP16.94■□□□□ 0.3
CLN3-254ENST00000637050 TAGAPQ8N103 731 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 OR10G2Q8NGC3 310 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 TFAP2CQ92754 450 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 POLR2J2Q9GZM3 115 aaKnown RBP16.94■□□□□ 0.3
CLN3-254ENST00000637050 POLR2J3Q9H1A7 115 aaKnown RBP16.94■□□□□ 0.3
CLN3-254ENST00000637050 Q9H521 79 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 MMP25Q9NPA2 562 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 DLL3Q9NYJ7 618 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 NPFFR2Q9Y5X5 522 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 TRBV4-1A0A0J9YWV2 114 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 ARRDC5A6NEK1 342 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 OR6C70A6NIJ9 312 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 CPSF4LA6NMK7 179 aaKnown RBP16.94■□□□□ 0.3
CLN3-254ENST00000637050 ICOSLGO75144 302 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 GKN3PP0CG01 181 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 TAS2R41P59536 307 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 MERTKQ12866 999 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 IGF2-ASQ6U949 168 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 C16orf47Q6ZP98 133 aaPredicted RBP16.94■□□□□ 0.3
CLN3-254ENST00000637050 ADAMTS16Q8TE57 1224 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 THAP3Q8WTV1 239 aaPredicted RBP16.94■□□□□ 0.3
CLN3-254ENST00000637050 DEFB126Q9BYW3 111 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 CTPS2Q9NRF8 586 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 MYOTQ9UBF9 498 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 TESQ9UGI8 421 aaKnown RBP16.94■□□□□ 0.3
CLN3-254ENST00000637050 SLC35A3Q9Y2D2 325 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 NTNG1Q9Y2I2 539 aa16.94■□□□□ 0.3
CLN3-254ENST00000637050 NSG1A0A0A6YYJ2 146 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 LOC101059948A0A1B0GTJ6 334 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 SCDO00767 359 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 ZNF354AO60765 605 aaPredicted RBP16.93■□□□□ 0.3
CLN3-254ENST00000637050 CCNB2O95067 398 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 OR5F1O95221 314 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 ANXA8P13928 327 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 HPGDP15428 266 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 RBMS1P29558 406 aaKnown RBP16.93■□□□□ 0.3
CLN3-254ENST00000637050 OTX2P32243 289 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 RFX4Q33E94 735 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 FGD3Q5JSP0 725 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 DCST1Q5T197 706 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 DESI1Q6ICB0 168 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 APOOLQ6UXV4 268 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 PLEKHM3Q6ZWE6 761 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 SLC5A8Q8N695 610 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 FAM71CQ8NEG0 241 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 SLC7A13Q8TCU3 470 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 FEVQ99581 238 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 ADI1Q9BV57 179 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 ANKRD19PQ9H560 264 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 TMCC3Q9ULS5 477 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 PCDHGA6Q9Y5G7 932 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 PTPRBP23467 1997 aa16.93■□□□□ 0.3
CLN3-254ENST00000637050 WWP2O00308 870 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 FAAHO00519 579 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 UGT2B11O75310 529 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 PPM1BO75688 479 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 CYP7B1O75881 506 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 CSTAP01040 98 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 NAGAP17050 411 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 IGFBP5P24593 272 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 HTR2AP28223 471 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 IFNA8P32881 189 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 ACAA2P42765 397 aaKnown RBP16.92■□□□□ 0.3
CLN3-254ENST00000637050 RAD23AP54725 363 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 ST3GAL3Q11203 375 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 EPS8Q12929 822 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 MED21Q13503 144 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 SEC23BQ15437 767 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 SLC36A3Q495N2 470 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 ZNF770Q6IQ21 691 aaPredicted RBP16.92■□□□□ 0.3
CLN3-254ENST00000637050 DHRSXQ8N5I4 330 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 ATG16L2Q8NAA4 619 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 NKD1Q969G9 470 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 ZNF559Q9BR84 538 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 ASCL3Q9NQ33 180 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 KNTC1P50748 2209 aa16.92■□□□□ 0.3
CLN3-254ENST00000637050 A0A1W2PQD3 144 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 SH3PXD2BA1X283 911 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 ADAM11O75078 769 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 THY1P04216 161 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 CELA2AP08217 269 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 UBTFL6P0CB48 400 aaPredicted RBP16.91■□□□□ 0.3
CLN3-254ENST00000637050 ADARB1P78563 741 aaKnown RBP16.91■□□□□ 0.3
CLN3-254ENST00000637050 TRAM2Q15035 370 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 CD226Q15762 336 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 PODNL1Q6PEZ8 512 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 ZNF550Q7Z398 422 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 DTX1Q86Y01 620 aa16.91■□□□□ 0.3
CLN3-254ENST00000637050 OR9Q2Q8NGE9 314 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms