RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CCDC126Q96EE4 140 aa5.62□□□□□ -1.51
CUX1-220ENST00000607092 KLHL15Q96M94 604 aa5.62□□□□□ -1.51
CUX1-220ENST00000607092 ZNF382Q96SR6 550 aa5.62□□□□□ -1.51
CUX1-220ENST00000607092 LMF2Q9BU23 707 aaKnown RBP5.62□□□□□ -1.51
CUX1-220ENST00000607092 ACSS3Q9H6R3 686 aa5.62□□□□□ -1.51
CUX1-220ENST00000607092 MED11Q9P086 117 aa5.62□□□□□ -1.51
CUX1-220ENST00000607092 KLHL9Q9P2J3 617 aa5.62□□□□□ -1.51
CUX1-220ENST00000607092 KLHL13Q9P2N7 655 aa5.62□□□□□ -1.51
CUX1-220ENST00000607092 LIPT1Q9Y234 373 aa5.62□□□□□ -1.51
CUX1-220ENST00000607092 RAI1Q7Z5J4 1906 aaPredicted RBP5.62□□□□□ -1.51
CUX1-220ENST00000607092 CADP27708 2225 aa5.62□□□□□ -1.51
CUX1-220ENST00000607092 TENM1Q9UKZ4 2725 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 A0A1W2PQD3 144 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 SERTM1A2A2V5 107 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 MANBAO00462 879 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 ATP8B1O43520 1251 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 CXCL13O43927 109 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 AQP8O94778 261 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 SUPT7LO94864 414 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 UTS2O95399 124 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 PSMG1O95456 288 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 YES1P07947 543 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 KRT16P08779 473 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 PRPS2P11908 318 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 PAX7P23759 505 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 VAMP1P23763 118 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 AGTR1P30556 359 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 NUDT6P53370 316 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 SUMO3P55854 103 aaPredicted RBP5.61□□□□□ -1.51
CUX1-220ENST00000607092 VLDLRP98155 873 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 CLCQ05315 142 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 CHRNB3Q05901 458 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 CKAP4Q07065 602 aaKnown RBP5.61□□□□□ -1.51
CUX1-220ENST00000607092 LOXL1Q08397 574 aaPredicted RBP5.61□□□□□ -1.51
CUX1-220ENST00000607092 LCP2Q13094 533 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 RAB35Q15286 201 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 IMPG1Q17R60 797 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.61□□□□□ -1.514e-6■■□□□ 11.4
CUX1-220ENST00000607092 SPDYAQ5MJ70 313 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 C6orf52Q5T4I8 152 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 LIPNQ5VXI9 398 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 ALKBH2Q6NS38 261 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 FIGNL1Q6PIW4 674 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 KLHL17Q6TDP4 642 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 PLXDC2Q6UX71 529 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 TMEM108Q6UXF1 575 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 DNM1P46Q6ZS02 220 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 Q6ZT83 130 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.61□□□□□ -1.51
CUX1-220ENST00000607092 GALNT10Q86SR1 603 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 MARCH3Q86UD3 253 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 GABRG1Q8N1C3 465 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 BANPQ8N9N5 519 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 ZNF527Q8NB42 609 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 SPATA4Q8NEY3 305 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 OR7G2Q8NG99 324 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 PIWIL2Q8TC59 973 aaKnown RBP5.61□□□□□ -1.51
CUX1-220ENST00000607092 FBXO25Q8TCJ0 367 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 RNF128Q8TEB7 428 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 C16orf78Q8WTQ4 265 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 OSTF1Q92882 214 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 ZNF764Q96H86 408 aaPredicted RBP5.61□□□□□ -1.51
CUX1-220ENST00000607092 ADGRG7Q96K78 797 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 TNFRSF13CQ96RJ3 184 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 TRAF4Q9BUZ4 470 aaPredicted RBP5.61□□□□□ -1.51
CUX1-220ENST00000607092 HOXD1Q9GZZ0 328 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 SHARPINQ9H0F6 387 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 MYNNQ9NPC7 610 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 UBQLN4Q9NRR5 601 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 FBXO34Q9NWN3 711 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 CISD1Q9NZ45 108 aaKnown RBP5.61□□□□□ -1.51
CUX1-220ENST00000607092 GRHL1Q9NZI5 618 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 ZNF180Q9UJW8 692 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 FBXO9Q9UK97 447 aaPredicted RBP5.61□□□□□ -1.51
CUX1-220ENST00000607092 VDAC3Q9Y277 283 aa5.61□□□□□ -1.51
CUX1-220ENST00000607092 GPC6Q9Y625 555 aaPredicted RBP5.61□□□□□ -1.51
CUX1-220ENST00000607092 A0A1W2PRB8 838 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 ELOA3DA6NLF2 546 aaPredicted RBP5.6□□□□□ -1.51
CUX1-220ENST00000607092 A8MT66 165 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 H0YC42 278 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 NDUFS8O00217 210 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 UPK1AO00322 258 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 UBFD1O14562 309 aaKnown RBP5.6□□□□□ -1.51
CUX1-220ENST00000607092 RAD51CO43502 376 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 CRCPO75575 148 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 OR4F21O95013 312 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 NKX2-2O95096 273 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 PLAUP00749 431 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 IGHV4-39P01824 125 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 JUNP05412 331 aaKnown RBP5.6□□□□□ -1.51
CUX1-220ENST00000607092 THBS1P07996 1170 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 SOD3P08294 240 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 SNRPAP09012 282 aaKnown RBP5.6□□□□□ -1.51
CUX1-220ENST00000607092 CTAGE8P0CG41 777 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 ATP6V1C1P21283 382 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 ATP5F1P24539 256 aaPredicted RBP5.6□□□□□ -1.51
CUX1-220ENST00000607092 PTAFRP25105 342 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 FKBP2P26885 142 aaKnown RBP5.6□□□□□ -1.51
CUX1-220ENST00000607092 SLC7A1P30825 629 aa5.6□□□□□ -1.51
CUX1-220ENST00000607092 GABRA3P34903 492 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms