RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 HBMQ6B0K9 141 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 ZSWIM3Q96MP5 696 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 B3GNT4Q9C0J1 378 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 XKR8Q9H6D3 395 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 CBLCQ9ULV8 474 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 IRAK3Q9Y616 596 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 WNT6Q9Y6F9 365 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 KDM4EB2RXH2 506 aaPredicted RBP17.12■□□□□ 0.33
UPF1-210ENST00000600689 KIAA0355O15063 1070 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 LATO43561 262 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 FCMRO60667 390 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 SOX30O94993 753 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 GPR1P46091 355 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 SLC36A2Q495M3 483 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 LY6G5CQ5SRR4 150 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 AADACL4Q5VUY2 407 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 CFAP77Q6ZQR2 320 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 OAFQ86UD1 273 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 ADIPOR2Q86V24 386 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 RASGRP3Q8IV61 690 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 OR51L1Q8NGJ5 315 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 OR5W2Q8NH69 310 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 DPH1Q9BZG8 443 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 ZCCHC2Q9C0B9 1178 aaKnown RBP17.12■□□□□ 0.33
UPF1-210ENST00000600689 EMC7Q9NPA0 242 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 DLL4Q9NR61 685 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 FBXL4Q9UKA2 621 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 ICKQ9UPZ9 632 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 PPIL1Q9Y3C6 166 aa17.12■□□□□ 0.33
UPF1-210ENST00000600689 NOTCH4Q99466 2003 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 FGBP02675 491 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 HOXB3P14651 431 aaPredicted RBP17.11■□□□□ 0.33
UPF1-210ENST00000600689 SNTB2Q13425 540 aaKnown RBP17.11■□□□□ 0.33
UPF1-210ENST00000600689 ACBD7Q8N6N7 88 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 IL17RCQ8NAC3 791 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 RBPMSQ93062 196 aaKnown RBP17.11■□□□□ 0.33
UPF1-210ENST00000600689 TIFAQ96CG3 184 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 SEC22CQ9BRL7 303 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 FAIM2Q9BWQ8 316 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 KCNN2Q9H2S1 579 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 BABAM2Q9NXR7 383 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 SAGE1Q9NXZ1 904 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 LCMT2O60294 686 aaKnown RBP17.11■□□□□ 0.33
UPF1-210ENST00000600689 PYCR1P32322 319 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 BLVRAP53004 296 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 TSPAN31Q12999 210 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 DUSP6Q16828 381 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 ALKAL2Q6UX46 152 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 Q6ZTK2 550 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 POGLUT1Q8NBL1 392 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 SRFBP1Q8NEF9 429 aaKnown RBP17.11■□□□□ 0.33
UPF1-210ENST00000600689 ZNF671Q8TAW3 534 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 ING5Q8WYH8 240 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 CHFRQ96EP1 664 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 NANSQ9NR45 359 aa17.11■□□□□ 0.33
UPF1-210ENST00000600689 AK6Q9Y3D8 172 aaKnown RBP17.11■□□□□ 0.33
UPF1-210ENST00000600689 IRGMA1A4Y4 181 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 H3BSH0 61 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 PI15O43692 258 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 LCN1P31025 176 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 OR12D2P58182 307 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 KIAA1024LP59773 190 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 COL28A1Q2UY09 1125 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 PGGHGQ32M88 737 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 SFRP5Q5T4F7 317 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 CDC73Q6P1J9 531 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 IRF7Q92985 503 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 AMDHD1Q96NU7 426 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 CPEB1Q9BZB8 566 aaKnown RBP17.1■□□□□ 0.33
UPF1-210ENST00000600689 LIPT1Q9Y234 373 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 ZNF593O00488 134 aaPredicted RBP17.1■□□□□ 0.33
UPF1-210ENST00000600689 VEGFCP49767 419 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 PCBP4P57723 403 aaKnown RBP17.1■□□□□ 0.33
UPF1-210ENST00000600689 FZD5Q13467 585 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 CAMK1Q14012 370 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 TRAM2Q15035 370 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 GARNL3Q5VVW2 1013 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 SLC25A25Q6KCM7 469 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 IKBIPQ70UQ0 350 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 KCTD20Q7Z5Y7 419 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 THAP4Q8WY91 577 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 ELMOD3Q96FG2 381 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 CXorf58Q96LI9 332 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 MCHR1Q99705 422 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 KLHL31Q9H511 634 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 LHX9Q9NQ69 397 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 MAFFQ9ULX9 164 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 MAB21L2Q9Y586 359 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 OR5K3A6NET4 321 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 GMDSO60547 372 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 RFX3P48380 749 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 ZP1P60852 638 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 SIM1P81133 766 aaPredicted RBP17.1■□□□□ 0.33
UPF1-210ENST00000600689 GSG1Q2KHT4 349 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 TMEM81Q6P7N7 255 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 LINGO2Q7L985 606 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 NLRC3Q7RTR2 1065 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 METTL3Q86U44 580 aaKnown RBP17.1■□□□□ 0.33
UPF1-210ENST00000600689 RPLP0P6Q8NHW5 317 aa17.1■□□□□ 0.33
UPF1-210ENST00000600689 C4orf36Q96KX1 117 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms