RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ZNF141Q15928 474 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 ZNF787Q6DD87 383 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 MIER2Q8N344 545 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 ZNF527Q8NB42 609 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 CA5BP1Q8WTZ4 195 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 PANX1Q96RD7 426 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 KLHDC3Q9BQ90 382 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 SAP130Q9H0E3 1048 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 CALHM2Q9HA72 323 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 POLE3Q9NRF9 147 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 SLC6A13Q9NSD5 602 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 CLCF1Q9UBD9 225 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 CAMK2AQ9UQM7 478 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 DCHS2Q6V1P9 2916 aa14.6□□□□□ -0.07
TRIM28-213ENST00000598355 ANKHD1Q8IWZ3 2542 aaKnown RBP14.6□□□□□ -0.07
TRIM28-213ENST00000598355 NPIPA5A0A0B4J1W7 369 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 FAM234BA2RU67 622 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 OR2M5A3KFT3 312 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 PRAMEF27A3QJZ7 478 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 CCDC154A6NI56 674 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 NPIPA7E9PJI5 369 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 C19orf84I3L1E1 186 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 KIAA0513O60268 411 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 NPIPA8P0DM63 369 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 PSMA4P25789 261 aaKnown RBP14.59□□□□□ -0.07
TRIM28-213ENST00000598355 MAGEA8P43361 318 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 KHKP50053 298 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 ATP4BP51164 291 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 MVDP53602 400 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 AQP5P55064 265 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 SF3B4Q15427 424 aaKnown RBP eCLIP14.59□□□□□ -0.072e-41■■■■□ 19.5
TRIM28-213ENST00000598355 PLPPR5Q32ZL2 321 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 FLYWCH1Q4VC44 716 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 POMZP3Q6PJE2 187 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 CCDC71Q8IV32 467 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-213ENST00000598355 TRIML2Q8N7C3 387 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 GATSQ8NAP1 163 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 NAXEQ8NCW5 288 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 ZFP90Q8TF47 636 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 CHMP6Q96FZ7 201 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 TUBA1CQ9BQE3 449 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 SLC52A3Q9NQ40 469 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 TMEM45AQ9NWC5 275 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 KCNE5Q9UJ90 142 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 RPH3AQ9Y2J0 694 aaPredicted RBP14.59□□□□□ -0.07
TRIM28-213ENST00000598355 FBN2P35556 2912 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 NOTCH2Q04721 2471 aa14.59□□□□□ -0.07
TRIM28-213ENST00000598355 ABCA12Q86UK0 2595 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 A0A087WZY1 265 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 CENPVL1A0A0U1RR11 272 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 HMGN4O00479 90 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 STX11O75558 287 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 HPGDP15428 266 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 HK1P19367 917 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 STARP49675 285 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 POLR2JP52435 117 aaKnown RBP14.58□□□□□ -0.08
TRIM28-213ENST00000598355 SUMO3P55854 103 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-213ENST00000598355 CLDN15P56746 228 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 ZNF117Q03924 483 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 TIGD2Q4W5G0 525 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 RAET1LQ5VY80 246 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 TNFAIP8L2Q6P589 184 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-213ENST00000598355 ARSKQ6UWY0 536 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 FRRS1Q6ZNA5 592 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 FUNDC1Q8IVP5 155 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 GTPBP8Q8N3Z3 284 aaPredicted RBP14.58□□□□□ -0.08
TRIM28-213ENST00000598355 FAM71CQ8NEG0 241 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 PIGQQ9BRB3 760 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 ENKD1Q9H0I2 346 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 ZNF385DQ9H6B1 395 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 EXD2Q9NVH0 621 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 ALKBH4Q9NXW9 302 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 ICAM5Q9UMF0 924 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 DTNAQ9Y4J8 743 aa14.58□□□□□ -0.08
TRIM28-213ENST00000598355 APCP25054 2843 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 HSPB2A8KAH6 182 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 ETV2O00321 342 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-213ENST00000598355 RFXANKO14593 260 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 OIP5O43482 229 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 FCMRO60667 390 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 DNAJA2O60884 412 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 TNFRSF21O75509 655 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 UGT2B17O75795 530 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 LINGO3P0C6S8 592 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 OR12D1P0DN82 309 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 PEPDP12955 493 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 CHI3L1P36222 383 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-213ENST00000598355 ZNF136P52737 540 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 STX1BP61266 288 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 HSPB2Q16082 182 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 SLC25A35Q3KQZ1 300 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 SP5Q6BEB4 398 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-213ENST00000598355 TYW3Q6IPR3 259 aaKnown RBP14.57□□□□□ -0.08
TRIM28-213ENST00000598355 CBLN3Q6UW01 205 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 C16orf62Q7Z3J2 963 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 RNF130Q86XS8 419 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 LIX1LQ8IVB5 337 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 RELL2Q8NC24 303 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-213ENST00000598355 TNIP2Q8NFZ5 429 aa14.57□□□□□ -0.08
TRIM28-213ENST00000598355 B4GALNT2Q8NHY0 566 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms