RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SNTA1Q13424 505 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 NTRK2Q16620 822 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 ZNF791Q3KP31 576 aaPredicted RBP14□□□□□ -0.17
TRIM28-209ENST00000597423 ACER2Q5QJU3 275 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 ABHD17BQ5VST6 288 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 HIPK1Q86Z02 1210 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 ICA1LQ8NDH6 482 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 TOR1AIP2Q8NFQ8 470 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 OR6T1Q8NGN1 323 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 OR5K1Q8NHB7 308 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 BRIX1Q8TDN6 353 aaKnown RBP14□□□□□ -0.17
TRIM28-209ENST00000597423 APOBEC4Q8WW27 367 aaKnown RBP14□□□□□ -0.17
TRIM28-209ENST00000597423 EPYCQ99645 322 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 MCHR1Q99705 422 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 TRIM2Q9C040 744 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 KLHL4Q9C0H6 718 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 LAT2Q9GZY6 243 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 EXOSC3Q9NQT5 275 aaKnown RBP14□□□□□ -0.17
TRIM28-209ENST00000597423 RLIMQ9NVW2 624 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 HPF1Q9NWY4 346 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 SELENONQ9NZV5 590 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 TMCC3Q9ULS5 477 aa14□□□□□ -0.17
TRIM28-209ENST00000597423 CCDC88CQ9P219 2028 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 G3V2T6 193 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 TNFRSF11BO00300 401 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 NKX2-8O15522 239 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 RRP8O43159 456 aaKnown RBP13.99□□□□□ -0.17
TRIM28-209ENST00000597423 FADS1O60427 444 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 CYP7B1O75881 506 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 GADD45GO95257 159 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 H1F0P07305 194 aaKnown RBP13.99□□□□□ -0.17
TRIM28-209ENST00000597423 ZNF23P17027 643 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 RRM2P31350 389 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 VHLP40337 213 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 SPIBQ01892 262 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 C17orf67Q0P5P2 114 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 ST3GAL3Q11203 375 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 COLEC12Q5KU26 742 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 HMBOX1Q6NT76 420 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 IL20RBQ6UXL0 311 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 ZBTB49Q6ZSB9 765 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 LINC00471Q8N535 108 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 POGLUT1Q8NBL1 392 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 OR5M3Q8NGP4 307 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 SNIP1Q8TAD8 396 aaKnown RBP13.99□□□□□ -0.17
TRIM28-209ENST00000597423 PHF10Q8WUB8 498 aaKnown RBP13.99□□□□□ -0.17
TRIM28-209ENST00000597423 CNOT9Q92600 299 aaKnown RBP13.99□□□□□ -0.17
TRIM28-209ENST00000597423 HGDQ93099 445 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 NAF1Q96HR8 494 aaKnown RBP13.99□□□□□ -0.17
TRIM28-209ENST00000597423 PRRC1Q96M27 445 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 CCDC86Q9H6F5 360 aaKnown RBP13.99□□□□□ -0.17
TRIM28-209ENST00000597423 METTL7AQ9H8H3 244 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 CNIH4Q9P003 139 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 RPS6KB2Q9UBS0 482 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 DKK4Q9UBT3 224 aa13.99□□□□□ -0.17
TRIM28-209ENST00000597423 TESQ9UGI8 421 aaKnown RBP13.99□□□□□ -0.17
TRIM28-209ENST00000597423 SAMHD1Q9Y3Z3 626 aaKnown RBP13.99□□□□□ -0.17
TRIM28-209ENST00000597423 CENPVL1A0A0U1RR11 272 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 ARGFXA6NJG6 315 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 CLDN24A6NM45 220 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 OR5F1O95221 314 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 ANGPTL1O95841 491 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 EPPINO95925 133 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 LINGO3P0C6S8 592 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 UBTFL6P0CB48 400 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-209ENST00000597423 PRKAR1AP10644 381 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 THRBP10828 461 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 FPR1P21462 350 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 MSX1P28360 303 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 SOX3P41225 446 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 YAP1P46937 504 aaKnown RBP13.98□□□□□ -0.17
TRIM28-209ENST00000597423 HMGA2P52926 109 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 IQCCQ4KMZ1 466 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 OGFRL1Q5TC84 451 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-209ENST00000597423 AGAP7PQ5VUJ5 663 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 SLC22A10Q63ZE4 541 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 FCRLBQ6BAA4 426 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 SLC30A6Q6NXT4 461 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 SHQ1Q6PI26 577 aaKnown RBP13.98□□□□□ -0.17
TRIM28-209ENST00000597423 LYPD8Q6UX82 237 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 RTL4Q6ZR62 310 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 PLEKHM3Q6ZWE6 761 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 MARCH3Q86UD3 253 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 GALNT16Q8N428 558 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 SIRT6Q8N6T7 355 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 PACRGLQ8N7B6 248 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 AGAP4Q96P64 663 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 ING2Q9H160 280 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 NMNAT1Q9HAN9 279 aaPredicted RBP13.98□□□□□ -0.17
TRIM28-209ENST00000597423 DNAJB12Q9NXW2 375 aaKnown RBP13.98□□□□□ -0.17
TRIM28-209ENST00000597423 KLRF1Q9NZS2 232 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 CNOT11Q9UKZ1 510 aaKnown RBP13.98□□□□□ -0.17
TRIM28-209ENST00000597423 CHST2Q9Y4C5 530 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 TESMINQ9Y4I5 508 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 AHCTF1Q8WYP5 2266 aa13.98□□□□□ -0.17
TRIM28-209ENST00000597423 TRAPPC13A5PLN9 417 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 PRAMEF25A6NGN4 478 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 OR6B1O95007 311 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 DIRAS1O95057 198 aa13.97□□□□□ -0.17
TRIM28-209ENST00000597423 CAPNS1P04632 268 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms