RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 WDR45Q9Y484 360 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 DTNAQ9Y4J8 743 aa13.2□□□□□ -0.3
VRK3-206ENST00000594090 DIDO1Q9BTC0 2240 aaKnown RBP13.2□□□□□ -0.3
VRK3-206ENST00000594090 CENPVL1A0A0U1RR11 272 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 PRAMEF27A3QJZ7 478 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 AHRRA9YTQ3 701 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 H3BNH8 94 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 HCRTR2O43614 444 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 KIAA0513O60268 411 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 FCMRO60667 390 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 TNFRSF21O75509 655 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 GUSBP08236 651 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 GLI4P10075 376 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 GP1BBP13224 206 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 CPN1P15169 458 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 HOXB9P17482 250 aaPredicted RBP13.19□□□□□ -0.3
VRK3-206ENST00000594090 MAGEA8P43361 318 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 LHX2P50458 406 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 RNF144AP50876 292 aaPredicted RBP13.19□□□□□ -0.3
VRK3-206ENST00000594090 MVDP53602 400 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 ZNF117Q03924 483 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 PMPCAQ10713 525 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 ZNF141Q15928 474 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 ACSF3Q4G176 576 aaPredicted RBP13.19□□□□□ -0.3
VRK3-206ENST00000594090 GPAT3Q53EU6 434 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 PDZK1Q5T2W1 519 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 METTL21CQ5VZV1 264 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 TYW3Q6IPR3 259 aaKnown RBP13.19□□□□□ -0.3
VRK3-206ENST00000594090 ARSKQ6UWY0 536 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 FRRS1Q6ZNA5 592 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 ZNF619Q8N2I2 560 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 B4GALNT2Q8NHY0 566 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 RND1Q92730 232 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 SDCCAG3Q96C92 435 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 TPT1P8Q9HAU6 139 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 POLE3Q9NRF9 147 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 COQ3Q9NZJ6 369 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 KCNE5Q9UJ90 142 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 VDAC3Q9Y277 283 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 PCDHB14Q9Y5E9 798 aa13.19□□□□□ -0.3
VRK3-206ENST00000594090 PCNX3Q9H6A9 2034 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 ARHGAP21Q5T5U3 1957 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 A0A087WZY1 265 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 A0A096LPI6 279 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 OR2M5A3KFT3 312 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 KDM4EB2RXH2 506 aaPredicted RBP13.18□□□□□ -0.3
VRK3-206ENST00000594090 UGT2B17O75795 530 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 H6PDO95479 791 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 ETFAP13804 333 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 CD1EP15812 388 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 ZNF708P17019 499 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 HPCAP84074 193 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 ART3Q13508 389 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 CDSNQ15517 529 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 SYPL1Q16563 259 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 GLYR1Q49A26 553 aaPredicted RBP13.18□□□□□ -0.3
VRK3-206ENST00000594090 PAGE3Q5JUK9 113 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 LRIF1Q5T3J3 769 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 OIT3Q8WWZ8 545 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 ZNF317Q96PQ6 595 aaPredicted RBP13.18□□□□□ -0.3
VRK3-206ENST00000594090 TRNT1Q96Q11 434 aaKnown RBP13.18□□□□□ -0.3
VRK3-206ENST00000594090 KLHDC3Q9BQ90 382 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 SAP130Q9H0E3 1048 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 LIPT1Q9Y234 373 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 LRRK2Q5S007 2527 aa13.18□□□□□ -0.3
VRK3-206ENST00000594090 DOPEY1Q5JWR5 2465 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 ASH1LQ9NR48 2969 aaKnown RBP13.17□□□□□ -0.3
VRK3-206ENST00000594090 SERINC4A6NH21 518 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 H0Y3Z8 333 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 OIP5O43482 229 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 EPPINO95925 133 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 CHRM4P08173 479 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 UBL4AP11441 157 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 ZNF17P17021 662 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 STARP49675 285 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 ARFIP2P53365 341 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 SUMO3P55854 103 aaPredicted RBP13.17□□□□□ -0.3
VRK3-206ENST00000594090 CLDN18P56856 261 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 SF3A3Q12874 501 aaKnown RBP eCLIP13.17□□□□□ -0.3
VRK3-206ENST00000594090 MAPK14Q16539 360 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 TMEM44Q2T9K0 475 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 PLPPR5Q32ZL2 321 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 NDUFAF6Q330K2 333 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 AP1ARQ63HQ0 302 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 CBLN3Q6UW01 205 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 SEM1Q6ZVN7 128 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 ANKFN1Q8N957 763 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 OR5M1Q8NGP8 315 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 ZPLD1Q8TCW7 415 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 PIGQQ9BRB3 760 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 SLC38A1Q9H2H9 487 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 MED17Q9NVC6 651 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 RNF6Q9Y252 685 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 CARD8Q9Y2G2 431 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 L3MBTL1Q9Y468 752 aa13.17□□□□□ -0.3
VRK3-206ENST00000594090 A0A0G2JNJ9 132 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 A0A1W2PP18 115 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 C7orf72A4D263 438 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 SHISA8B8ZZ34 492 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 FAM47E-STBD1D6RA91 191 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms