RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SLC9A3P48764 834 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 AGTR2P50052 363 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ETV1P50549 477 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 TDGF1P3P51864 188 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 RRADP55042 308 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 CLDN8P56748 225 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 IL2P60568 153 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 CDC42P60953 191 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 BTG1P62324 171 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 RPS15P62841 145 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 PPP3R1P63098 170 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 RPS21P63220 83 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 VLDLRP98155 873 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 CD83Q01151 205 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 DSC2Q02487 901 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 RBPJQ06330 500 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ZNF33BQ06732 778 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 LRRC74AQ0VAA2 488 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 MLLT11Q13015 90 aaPredicted RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 MRPL28Q13084 256 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 CDH18Q13634 790 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 C1DQ13901 141 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 BOP1Q14137 746 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 PTGR1Q14914 329 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ZNF169Q14929 603 aaPredicted RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 LARS2Q15031 903 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 TAF1AQ15573 450 aaPredicted RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 SSX1Q16384 188 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 TATDN3Q17R31 274 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 GTDC1Q4AE62 458 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 KLHL12Q53G59 568 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ALFQ53S48 1182 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 CLLU1Q5K131 121 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 PDZK1Q5T2W1 519 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 SHEQ5VZ18 495 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 TRIQKQ629K1 86 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 FAM205BPQ63HN1 556 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 SAXO2Q658L1 398 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 KIAA1161Q6NSJ0 714 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 TMEM71Q6P5X7 295 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ENPP7Q6UWV6 458 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 FAM131AQ6UXB0 335 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 HSDL2Q6YN16 418 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 LDB1Q86U70 411 aaPredicted RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 ZNF761Q86XN6 746 aaPredicted RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 KIF18BQ86Y91 864 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 GPALPP1Q8IXQ4 340 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 GHDCQ8N2G8 530 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 NATD1Q8N6N6 113 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 DUSP18Q8NEJ0 188 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 OR4M2Q8NGB6 313 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 OR4F6Q8NGB9 312 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 OR10G2Q8NGC3 310 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 OR52B6Q8NGF0 335 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 OR4C15Q8NGM1 316 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 OR8K5Q8NH50 307 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ARRDC2Q8TBH0 407 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 METTL6Q8TCB7 284 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 CD200R1Q8TD46 325 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 DEDD2Q8WXF8 326 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 KLHL6Q8WZ60 621 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 AKAP1Q92667 903 aaKnown RBP eCLIP3.87□□□□□ -1.79
LIG3-211ENST00000588713 GGHQ92820 318 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 RNF34Q969K3 372 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 SLC25A46Q96AG3 418 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 CREB3L1Q96BA8 519 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 AHCYL2Q96HN2 611 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 OR52E6Q96RD3 313 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 CITED4Q96RK1 184 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 DCLRE1CQ96SD1 692 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 GPR21Q99679 349 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 MGLLQ99685 303 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 C17orf62Q9BQA9 187 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 TBCDQ9BTW9 1192 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 MND1Q9BWT6 205 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ASPNQ9BXN1 380 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ZYG11BQ9C0D3 744 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 C11orf54Q9H0W9 315 aaPredicted RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 NT5DC2Q9H857 520 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ANKRA2Q9H9E1 313 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 FOLH1BQ9HBA9 442 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 TRIM39Q9HCM9 518 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 EMC7Q9NPA0 242 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ISYNA1Q9NPH2 558 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.87□□□□□ -1.79
LIG3-211ENST00000588713 C1GALT1Q9NS00 363 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 RASSF1Q9NS23 344 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 RAD18Q9NS91 495 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ABCC13Q9NSE7 274 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 RBFOX1Q9NWB1 397 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 FAM120CQ9NX05 1096 aaKnown RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 IMPAD1Q9NX62 359 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ZNF226Q9NYT6 803 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 MAT2BQ9NZL9 334 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 MARCH2Q9P0N8 246 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 NDOR1Q9UHB4 597 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 FBXO9Q9UK97 447 aaPredicted RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 ADAM30Q9UKF2 790 aa3.87□□□□□ -1.79
LIG3-211ENST00000588713 ELF5Q9UKW6 265 aaPredicted RBP3.87□□□□□ -1.79
LIG3-211ENST00000588713 ZNF490Q9ULM2 529 aaPredicted RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms