RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 CLK3P49761 638 aaKnown RBP9.61□□□□□ -0.87
LIG3-203ENST00000585370 PGDP52209 483 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 ATP12AP54707 1039 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 UGT2B15P54855 530 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 TMPRSS3P57727 454 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 IL5RAQ01344 420 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 CD47Q08722 323 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 CDK5R2Q13319 367 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 PIN1Q13526 163 aaPredicted RBP9.61□□□□□ -0.87
LIG3-203ENST00000585370 LAPTM4AQ15012 233 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 NSDHLQ15738 373 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 ZNF141Q15928 474 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 DECR1Q16698 335 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 MINDY4Q4G0A6 757 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 FLYWCH1Q4VC44 716 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 MFSD4BQ5TF39 518 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 ANKRD34AQ69YU3 496 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 ZNF836Q6ZNA1 936 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 OVCH1Q7RTY7 1134 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 ZNF550Q7Z398 422 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 TMPRSS9Q7Z410 1059 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 WDR53Q7Z5U6 358 aaPredicted RBP9.61□□□□□ -0.87
LIG3-203ENST00000585370 RBM45Q8IUH3 476 aaKnown RBP9.61□□□□□ -0.87
LIG3-203ENST00000585370 LACC1Q8IV20 430 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 ZNF440Q8IYI8 595 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 RNF113BQ8IZP6 322 aaKnown RBP9.61□□□□□ -0.87
LIG3-203ENST00000585370 CLIP4Q8N3C7 705 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 AQP11Q8NBQ7 271 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 SIMC1Q8NDZ2 872 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 C16orf52Q8NHV5 167 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 GNPDA2Q8TDQ7 276 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 KCNE4Q8WWG9 221 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 MCHR1Q99705 422 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 ZNF559Q9BR84 538 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 DPH1Q9BZG8 443 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 SOX17Q9H6I2 414 aaPredicted RBP9.61□□□□□ -0.87
LIG3-203ENST00000585370 SYNDIG1Q9H7V2 258 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 VCX3AQ9NNX9 186 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 FBXO8Q9NRD0 319 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 SCN3BQ9NY72 215 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 TPRKBQ9Y3C4 175 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 OR10H1Q9Y4A9 318 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 CCDC88CQ9P219 2028 aa9.61□□□□□ -0.87
LIG3-203ENST00000585370 TRBV4-1A0A0J9YWV2 114 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 TRAPPC13A5PLN9 417 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 CDHR4A6H8M9 788 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 FRG2CA6NGY1 282 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 CDRT15L2A8MXV6 281 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 SEMA7AO75326 666 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 NME6O75414 186 aaPredicted RBP9.6□□□□□ -0.87
LIG3-203ENST00000585370 TFAP2AP05549 437 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 CD63P08962 238 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 CT45A8P0DMV1 189 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 CT45A9P0DMV2 189 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 CRHBPP24387 322 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 POLR2IP36954 125 aaKnown RBP9.6□□□□□ -0.87
LIG3-203ENST00000585370 CRISP1P54107 249 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 UCNP55089 124 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 SLC37A1P57057 533 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 CDC42P60953 191 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 MC2RQ01718 297 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 RAPSNQ13702 412 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 NPTX1Q15818 432 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 NKAIN1Q4KMZ8 207 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 CT45A2Q5DJT8 189 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 ENTPD8Q5MY95 495 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 CCNJQ5T5M9 372 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 PHF19Q5T6S3 580 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 C1orf189Q5VU69 101 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 BROXQ5VW32 411 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 HLA-DQA1Q5Y7H0 255 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 C1orf94Q6P1W5 598 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 PODNL1Q6PEZ8 512 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 BORAQ6PGQ7 559 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 FIGNL1Q6PIW4 674 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 PLEKHM3Q6ZWE6 761 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 OLIG3Q7RTU3 272 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 SHISA5Q8N114 240 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 RCBTB1Q8NDN9 531 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 C17orf47Q8NEP4 570 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 STT3BQ8TCJ2 826 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 SLC7A13Q8TCU3 470 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 SNRNP27Q8WVK2 155 aaKnown RBP9.6□□□□□ -0.87
LIG3-203ENST00000585370 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.6□□□□□ -0.87
LIG3-203ENST00000585370 IPCEF1Q8WWN9 437 aaPredicted RBP9.6□□□□□ -0.87
LIG3-203ENST00000585370 ACOT11Q8WXI4 607 aaPredicted RBP9.6□□□□□ -0.87
LIG3-203ENST00000585370 DIO2Q92813 273 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 CLIP3Q96DZ5 547 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 LCORQ96JN0 433 aaPredicted RBP9.6□□□□□ -0.87
LIG3-203ENST00000585370 HS6ST2Q96MM7 605 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 LRFN5Q96NI6 719 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 SEMA4CQ9C0C4 833 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 VN1R1Q9GZP7 353 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 QRSL1Q9H0R6 528 aaKnown RBP9.6□□□□□ -0.87
LIG3-203ENST00000585370 SLC26A1Q9H2B4 701 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 ADNPQ9H2P0 1102 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 TMEM27Q9HBJ8 222 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 CCNB1IP1Q9NPC3 277 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 RHCGQ9UBD6 479 aa9.6□□□□□ -0.87
LIG3-203ENST00000585370 COPS7AQ9UBW8 275 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms