RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 LINC00471Q8N535 108 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 LSMEM1Q8N8F7 131 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 PIK3C3Q8NEB9 887 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 OR6T1Q8NGN1 323 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 OR10Q1Q8NGQ4 319 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 THAP3Q8WTV1 239 aaPredicted RBP14.02□□□□□ -0.17
SS18-215ENST00000580642 ASB15Q8WXK1 588 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 PSMF1Q92530 271 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 SDCCAG3Q96C92 435 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 LMF1Q96S06 567 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 CCNL2Q96S94 520 aaPredicted RBP14.02□□□□□ -0.17
SS18-215ENST00000580642 ZNF559Q9BR84 538 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 C9orf16Q9BUW7 83 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 TRIM2Q9C040 744 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 LAT2Q9GZY6 243 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 CDCP1Q9H5V8 836 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 NTN4Q9HB63 628 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 ZBTB20Q9HC78 741 aaPredicted RBP14.02□□□□□ -0.17
SS18-215ENST00000580642 CPNE5Q9HCH3 593 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 DNAJB12Q9NXW2 375 aaKnown RBP14.02□□□□□ -0.17
SS18-215ENST00000580642 CNIH4Q9P003 139 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 CCDC88CQ9P219 2028 aa14.02□□□□□ -0.17
SS18-215ENST00000580642 CENPVL1A0A0U1RR11 272 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 A0A1W2PRQ8 180 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 ARRDC5A6NEK1 342 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 hCG_2039718K7EN88 272 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 ZNF264O43296 627 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 NDUFB5O43674 189 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 UBL4AP11441 157 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 FPR1P21462 350 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 MSX1P28360 303 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 VHLP40337 213 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 PTDSS1P48651 473 aaKnown RBP14.01□□□□□ -0.17
SS18-215ENST00000580642 HLCSP50747 726 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 C17orf67Q0P5P2 114 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 DGCR6Q14129 220 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 SWT1Q5T5J6 900 aaKnown RBP14.01□□□□□ -0.17
SS18-215ENST00000580642 ZNF613Q6PF04 617 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 SHQ1Q6PI26 577 aaKnown RBP14.01□□□□□ -0.17
SS18-215ENST00000580642 AMIGO2Q86SJ2 522 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 PRR22Q8IZ63 422 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 OFCC1Q8IZS5 231 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 TMEM156Q8N614 296 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 OR5K1Q8NHB7 308 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 EME1Q96AY2 570 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 THOC3Q96J01 351 aaKnown RBP14.01□□□□□ -0.17
SS18-215ENST00000580642 RLIMQ9NVW2 624 aa14.01□□□□□ -0.17
SS18-215ENST00000580642 IGLV3-32A0A0A0MS00 114 aa14□□□□□ -0.17
SS18-215ENST00000580642 NPIPA5A0A0B4J1W7 369 aa14□□□□□ -0.17
SS18-215ENST00000580642 NPIPA7E9PJI5 369 aa14□□□□□ -0.17
SS18-215ENST00000580642 M0R3H8 397 aa14□□□□□ -0.17
SS18-215ENST00000580642 GTPBP1O00178 669 aaKnown RBP14□□□□□ -0.17
SS18-215ENST00000580642 ZNF354AO60765 605 aaPredicted RBP14□□□□□ -0.17
SS18-215ENST00000580642 E2F6O75461 281 aa14□□□□□ -0.17
SS18-215ENST00000580642 CELA2AP08217 269 aa14□□□□□ -0.17
SS18-215ENST00000580642 ADRB1P08588 477 aa14□□□□□ -0.17
SS18-215ENST00000580642 NPIPA8P0DM63 369 aa14□□□□□ -0.17
SS18-215ENST00000580642 ZNF136P52737 540 aa14□□□□□ -0.17
SS18-215ENST00000580642 FBXW4P57775 412 aa14□□□□□ -0.17
SS18-215ENST00000580642 ST3GAL3Q11203 375 aa14□□□□□ -0.17
SS18-215ENST00000580642 CDC20Q12834 499 aa14□□□□□ -0.17
SS18-215ENST00000580642 ABHD17BQ5VST6 288 aa14□□□□□ -0.17
SS18-215ENST00000580642 SLC30A6Q6NXT4 461 aa14□□□□□ -0.17
SS18-215ENST00000580642 RTL4Q6ZR62 310 aa14□□□□□ -0.17
SS18-215ENST00000580642 VASH2Q86V25 355 aa14□□□□□ -0.17
SS18-215ENST00000580642 COMTD1Q86VU5 262 aa14□□□□□ -0.17
SS18-215ENST00000580642 APLFQ8IW19 511 aaPredicted RBP14□□□□□ -0.17
SS18-215ENST00000580642 ZNF614Q8N883 585 aa14□□□□□ -0.17
SS18-215ENST00000580642 OR4D11Q8NGI4 311 aa14□□□□□ -0.17
SS18-215ENST00000580642 VANGL1Q8TAA9 524 aaPredicted RBP14□□□□□ -0.17
SS18-215ENST00000580642 PHOSPHO1Q8TCT1 267 aa14□□□□□ -0.17
SS18-215ENST00000580642 BRIX1Q8TDN6 353 aaKnown RBP14□□□□□ -0.17
SS18-215ENST00000580642 PAQR8Q8TEZ7 354 aa14□□□□□ -0.17
SS18-215ENST00000580642 ARSGQ96EG1 525 aa14□□□□□ -0.17
SS18-215ENST00000580642 FRMD6Q96NE9 622 aa14□□□□□ -0.17
SS18-215ENST00000580642 MCHR1Q99705 422 aa14□□□□□ -0.17
SS18-215ENST00000580642 PSD2Q9BQI7 771 aa14□□□□□ -0.17
SS18-215ENST00000580642 FNDC11Q9BVV2 318 aa14□□□□□ -0.17
SS18-215ENST00000580642 KLHL4Q9C0H6 718 aa14□□□□□ -0.17
SS18-215ENST00000580642 RNF32Q9H0A6 362 aa14□□□□□ -0.17
SS18-215ENST00000580642 LIN28AQ9H9Z2 209 aaKnown RBP14□□□□□ -0.17
SS18-215ENST00000580642 TMEM27Q9HBJ8 222 aa14□□□□□ -0.17
SS18-215ENST00000580642 SH2D2AQ9NP31 389 aa14□□□□□ -0.17
SS18-215ENST00000580642 HPF1Q9NWY4 346 aa14□□□□□ -0.17
SS18-215ENST00000580642 A4GNTQ9UNA3 340 aa14□□□□□ -0.17
SS18-215ENST00000580642 SAMHD1Q9Y3Z3 626 aaKnown RBP14□□□□□ -0.17
SS18-215ENST00000580642 HTR3EA5X5Y0 456 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 G3V2T6 193 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 TNFRSF11BO00300 401 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 SNX4O95219 450 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 GADD45GO95257 159 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 ANGPTL1O95841 491 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 HPRP00739 348 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 MT-ND1P03886 318 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 H1F0P07305 194 aaKnown RBP13.99□□□□□ -0.17
SS18-215ENST00000580642 TNFRSF1BP20333 461 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 ITGA3P26006 1051 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 RRM2P31350 389 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 CASRP41180 1078 aa13.99□□□□□ -0.17
SS18-215ENST00000580642 SOX3P41225 446 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms