RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 KLK10O43240 276 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 SCO2O43819 266 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 GMFGO60234 142 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 PRSS23O95084 383 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 F10P00742 488 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 FBXO45P0C2W1 286 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 RRM2P31350 389 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 PLA2G5P39877 138 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 ZNF791Q3KP31 576 aaPredicted RBP23.01■■□□□ 1.27
SHMT1-207ENST00000580002 CBLN3Q6UW01 205 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 SLC22A8Q8TCC7 542 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 PHF10Q8WUB8 498 aaKnown RBP23.01■■□□□ 1.27
SHMT1-207ENST00000580002 POP5Q969H6 163 aaKnown RBP23.01■■□□□ 1.27
SHMT1-207ENST00000580002 SLC29A1Q99808 456 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 YY1AP1Q9H869 796 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 SLC13A4Q9UKG4 626 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 OAZ3Q9UMX2 235 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 A4GNTQ9UNA3 340 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 YARS2Q9Y2Z4 477 aaKnown RBP23.01■■□□□ 1.27
SHMT1-207ENST00000580002 SCDO00767 359 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 GNGT2O14610 69 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 CASQ2O14958 399 aaPredicted RBP23.01■■□□□ 1.27
SHMT1-207ENST00000580002 DNAJB5O75953 348 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 FCGR1AP12314 374 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 ITGA3P26006 1051 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 HTR2AP28223 471 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 RGS8P57771 180 aaPredicted RBP23.01■■□□□ 1.27
SHMT1-207ENST00000580002 PHOSPHO1Q8TCT1 267 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 TRIM45Q9H8W5 580 aaPredicted RBP23.01■■□□□ 1.27
SHMT1-207ENST00000580002 GALNT9Q9HCQ5 603 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 ATP13A2Q9NQ11 1180 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 SLC9A8Q9Y2E8 581 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 CARD8Q9Y2G2 431 aa23.01■■□□□ 1.27
SHMT1-207ENST00000580002 A6NL46 340 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 CPSF4LA6NMK7 179 aaKnown RBP23■■□□□ 1.27
SHMT1-207ENST00000580002 B4DXG7 233 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 AP3D1O14617 1153 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 DEAF1O75398 565 aaPredicted RBP23■■□□□ 1.27
SHMT1-207ENST00000580002 CSTAP01040 98 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 HPGDP15428 266 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 PRKACGP22612 351 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 EVI2BP34910 448 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 ZNF605Q86T29 641 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 ARMC10Q8N2F6 343 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 KCNE4Q8WWG9 221 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 SPACA9Q96E40 222 aaPredicted RBP23■■□□□ 1.27
SHMT1-207ENST00000580002 HOXD1Q9GZZ0 328 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 STOML1Q9UBI4 398 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 EXPH5Q8NEV8 1989 aa23■■□□□ 1.27
SHMT1-207ENST00000580002 DMXL2Q8TDJ6 3036 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 HS6ST1O60243 411 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 THY1P04216 161 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 RYKP34925 604 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 ACAA2P42765 397 aaKnown RBP22.99■■□□□ 1.27
SHMT1-207ENST00000580002 ACER2Q5QJU3 275 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 SLC5A8Q8N695 610 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 SH3YL1Q96HL8 342 aaPredicted RBP22.99■■□□□ 1.27
SHMT1-207ENST00000580002 IP6K3Q96PC2 410 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 MCHR1Q99705 422 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 PIP5K1AQ99755 562 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 COQ10BQ9H8M1 238 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 KLHL28Q9NXS3 571 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 RHCEP18577 417 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 SSR4P51571 173 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 CDH12P55289 794 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 SPIBQ01892 262 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 NTRK2Q16620 822 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 EIPR1Q53HC9 387 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 OGFRL1Q5TC84 451 aaPredicted RBP22.99■■□□□ 1.27
SHMT1-207ENST00000580002 OR5M10Q6IEU7 315 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 ACER3Q9NUN7 267 aa22.99■■□□□ 1.27
SHMT1-207ENST00000580002 ALG1L2C9J202 215 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 SOCS2O14508 198 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 CAPNS1P04632 268 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 NAGAP17050 411 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 PTGDSP41222 190 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 LSM11P83369 360 aaKnown RBP eCLIP22.98■■□□□ 1.27
SHMT1-207ENST00000580002 AIMP2Q13155 320 aaKnown RBP22.98■■□□□ 1.27
SHMT1-207ENST00000580002 INPP5JQ15735 1006 aaPredicted RBP22.98■■□□□ 1.27
SHMT1-207ENST00000580002 ENTPD8Q5MY95 495 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 NUP54Q7Z3B4 507 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 PACS2Q86VP3 889 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 BEST3Q8N1M1 668 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 SLC15A4Q8N697 577 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 ZNF527Q8NB42 609 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 ASB15Q8WXK1 588 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 FER1L6-AS2Q96M78 137 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 TACO1Q9BSH4 297 aaKnown RBP22.98■■□□□ 1.27
SHMT1-207ENST00000580002 BDH2Q9BUT1 245 aa22.98■■□□□ 1.27
SHMT1-207ENST00000580002 FAM32AQ9Y421 112 aaKnown RBP22.98■■□□□ 1.27
SHMT1-207ENST00000580002 ANGPTL1O95841 491 aa22.97■■□□□ 1.27
SHMT1-207ENST00000580002 ZNF23P17027 643 aa22.97■■□□□ 1.27
SHMT1-207ENST00000580002 EFR3AQ14156 821 aa22.97■■□□□ 1.27
SHMT1-207ENST00000580002 TBL1XR1Q9BZK7 514 aa22.97■■□□□ 1.27
SHMT1-207ENST00000580002 NMNAT1Q9HAN9 279 aaPredicted RBP22.97■■□□□ 1.27
SHMT1-207ENST00000580002 LYVE1Q9Y5Y7 322 aa22.97■■□□□ 1.27
SHMT1-207ENST00000580002 CHCHD2Q9Y6H1 151 aaPredicted RBP22.97■■□□□ 1.27
SHMT1-207ENST00000580002 HEATR5AQ86XA9 2040 aa22.97■■□□□ 1.27
SHMT1-207ENST00000580002 ITGA2P17301 1181 aa22.96■■□□□ 1.27
SHMT1-207ENST00000580002 LCN1P31025 176 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms