RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CLIP4Q8N3C7 705 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 OR5M3Q8NGP4 307 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 GRHL3Q8TE85 626 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 PAQR8Q8TEZ7 354 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 CHID1Q9BWS9 393 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 RSPO3Q9BXY4 272 aaPredicted RBP9.84□□□□□ -0.83
SS18-213ENST00000579640 ZNF552Q9H707 407 aaPredicted RBP9.84□□□□□ -0.83
SS18-213ENST00000579640 DCLRE1BQ9H816 532 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 METTL7AQ9H8H3 244 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 SH2D2AQ9NP31 389 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 EXOSC3Q9NQT5 275 aaKnown RBP9.84□□□□□ -0.83
SS18-213ENST00000579640 PRDM4Q9UKN5 801 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 RAXQ9Y2V3 346 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 CHST2Q9Y4C5 530 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 CHCHD2Q9Y6H1 151 aaPredicted RBP9.84□□□□□ -0.83
SS18-213ENST00000579640 APC2O95996 2303 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 MED13Q9UHV7 2174 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 A0A087WV48 116 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 ANKRD33BA6NCL7 494 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 A6NL46 340 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 CLDN24A6NM45 220 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 C1QTNF9BB2RNN3 333 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 GTPBP1O00178 669 aaKnown RBP9.84□□□□□ -0.83
SS18-213ENST00000579640 ZNF264O43296 627 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 KRT36O76013 467 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 ANGPTL1O95841 491 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 C1QTNF9P0C862 333 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 UBL4AP11441 157 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 SLC22A10Q63ZE4 541 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 DESI1Q6ICB0 168 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 APOOLQ6UXV4 268 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 RANBP3LQ86VV4 465 aaPredicted RBP9.84□□□□□ -0.83
SS18-213ENST00000579640 ZDHHC21Q8IVQ6 265 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 FAM71CQ8NEG0 241 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 TOR1AIP2Q8NFQ8 470 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 PHOSPHO1Q8TCT1 267 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 ZCCHC14Q8WYQ9 949 aaKnown RBP9.84□□□□□ -0.83
SS18-213ENST00000579640 NR4A3Q92570 626 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 C7orf34Q96L11 122 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 ZNF347Q96SE7 839 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 OSBPL11Q9BXB4 747 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 POLR2J2Q9GZM3 115 aaKnown RBP9.84□□□□□ -0.83
SS18-213ENST00000579640 LAT2Q9GZY6 243 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 POLR2J3Q9H1A7 115 aaKnown RBP9.84□□□□□ -0.83
SS18-213ENST00000579640 CPNE5Q9HCH3 593 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 TIMMDC1Q9NPL8 285 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 RLIMQ9NVW2 624 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 DNAJB12Q9NXW2 375 aaKnown RBP9.84□□□□□ -0.83
SS18-213ENST00000579640 KLRF1Q9NZS2 232 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 ENPP4Q9Y6X5 453 aa9.84□□□□□ -0.83
SS18-213ENST00000579640 ACACAQ13085 2346 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 H3BNX3 289 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 SCO2O43819 266 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 FMO6PO60774 539 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 FASP25445 335 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 CASP3P42574 277 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 OR1E2P47887 323 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 VLDLRP98155 873 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 OC90Q02509 493 aaPredicted RBP9.83□□□□□ -0.84
SS18-213ENST00000579640 C17orf67Q0P5P2 114 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 TUBA3CQ13748 450 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 CD226Q15762 336 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 ZNF468Q5VIY5 522 aaPredicted RBP9.83□□□□□ -0.84
SS18-213ENST00000579640 TUBA3EQ6PEY2 450 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 LINC00696Q6ZRV3 163 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 MARCH3Q86UD3 253 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 COMTD1Q86VU5 262 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 CYP4Z1Q86W10 505 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 FDCSPQ8NFU4 85 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 SNRNP27Q8WVK2 155 aaKnown RBP9.83□□□□□ -0.84
SS18-213ENST00000579640 CNOT9Q92600 299 aaKnown RBP9.83□□□□□ -0.84
SS18-213ENST00000579640 HAS2Q92819 552 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 ZNF300Q96RE9 604 aaPredicted RBP9.83□□□□□ -0.84
SS18-213ENST00000579640 ANGPTL4Q9BY76 406 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 AMBRA1Q9C0C7 1298 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 SACM1LQ9NTJ5 587 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 LRFN1Q9P244 771 aa9.83□□□□□ -0.84
SS18-213ENST00000579640 TESQ9UGI8 421 aaKnown RBP9.83□□□□□ -0.84
SS18-213ENST00000579640 CNOT11Q9UKZ1 510 aaKnown RBP9.83□□□□□ -0.84
SS18-213ENST00000579640 FAM32AQ9Y421 112 aaKnown RBP9.83□□□□□ -0.84
SS18-213ENST00000579640 CEP295Q9C0D2 2601 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 URB1O60287 2271 aaKnown RBP9.82□□□□□ -0.84
SS18-213ENST00000579640 IGLV3-32A0A0A0MS00 114 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 OR5H15A6NDH6 313 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 M0R3H8 397 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 AP3D1O14617 1153 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 DPM1O60762 260 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 DEAF1O75398 565 aaPredicted RBP9.82□□□□□ -0.84
SS18-213ENST00000579640 SNX4O95219 450 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 WDPCPO95876 746 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 P04436 131 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 UBTFL6P0CB48 400 aaPredicted RBP9.82□□□□□ -0.84
SS18-213ENST00000579640 UQCRBP14927 111 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 RHCEP18577 417 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 TNFRSF1BP20333 461 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 MSX1P28360 303 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 IFNA8P32881 189 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 CD96P40200 585 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 PTGDSP41222 190 aa9.82□□□□□ -0.84
SS18-213ENST00000579640 SLC6A8P48029 635 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms