RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 TRAM2Q15035 370 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 P2RY14Q15391 338 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 SF3A2Q15428 464 aaKnown RBP12.36□□□□□ -0.43
VPS4A-204ENST00000566354 UAP1L1Q3KQV9 507 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 RRM2BQ7LG56 351 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 OLIG3Q7RTU3 272 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 PRICKLE2Q7Z3G6 844 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 ZFP41Q8N8Y5 198 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 TMEM145Q8NBT3 493 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 NEIL3Q8TAT5 605 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 SFXN5Q8TD22 340 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 RLN3Q8WXF3 142 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 NECAB3Q96P71 396 aaPredicted RBP12.36□□□□□ -0.43
VPS4A-204ENST00000566354 BBS4Q96RK4 519 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 SECISBP2Q96T21 854 aaKnown RBP12.36□□□□□ -0.43
VPS4A-204ENST00000566354 PHF11Q9UIL8 331 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 CA5BQ9Y2D0 317 aa12.36□□□□□ -0.43
VPS4A-204ENST00000566354 ORC5O43913 435 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 SLC43A1O75387 559 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 CLEC3AO75596 197 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 LALBAP00709 142 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 DCNP07585 359 aaKnown RBP12.35□□□□□ -0.43
VPS4A-204ENST00000566354 CELP19835 753 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 TRIM23P36406 574 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 CD79BP40259 229 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 SSR2P43308 183 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 STK11Q15831 433 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 SHFQ7M4L6 423 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 KCTD20Q7Z5Y7 419 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 HMGN2P46Q86SG4 172 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 KLHL36Q8N4N3 616 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 AMER3Q8N944 861 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 OSTF1Q92882 214 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 INTS12Q96CB8 462 aaKnown RBP12.35□□□□□ -0.43
VPS4A-204ENST00000566354 NRTNQ99748 197 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 TMED9Q9BVK6 235 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 HDHD5Q9BXW7 423 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 TEX101Q9BY14 249 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 ANKRD19PQ9H560 264 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 WDR26Q9H7D7 661 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 TRIM45Q9H8W5 580 aaPredicted RBP12.35□□□□□ -0.43
VPS4A-204ENST00000566354 B3GAT2Q9NPZ5 323 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 ASB6Q9NWX5 421 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 NLKQ9UBE8 527 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 MALT1Q9UDY8 824 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 KLF15Q9UIH9 416 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 SLC13A4Q9UKG4 626 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 ASB4Q9Y574 426 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 CACNA1IQ9P0X4 2223 aa12.35□□□□□ -0.43
VPS4A-204ENST00000566354 OR5K3A6NET4 321 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 GABRPO00591 440 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 SLC19A2O60779 497 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 CPNE3O75131 537 aaKnown RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 ZNF780AO75290 641 aaPredicted RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 HMGN2P05204 90 aaKnown RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 GALP22466 123 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 PSMB5P28074 263 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 SOX18P35713 384 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 INPP1P49441 399 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 CLDN2P57739 230 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 ST3GAL3Q11203 375 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 LASP1Q14847 261 aaKnown RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 AADACL4Q5VUY2 407 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 MEX3DQ86XN8 651 aaKnown RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 MARCH9Q86YJ5 346 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 FAM160A2Q8N612 972 aaPredicted RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 OR52N1Q8NH53 320 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 OTULINQ96BN8 352 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 MOAP1Q96BY2 351 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 OTUB1Q96FW1 271 aaPredicted RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 TOE1Q96GM8 510 aaKnown RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 YIPF4Q9BSR8 244 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 MENTQ9BUN1 341 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 LIN7BQ9HAP6 207 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 MED17Q9NVC6 651 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 CNIH4Q9P003 139 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 SLC23A2Q9UGH3 650 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 LIPT1Q9Y234 373 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 EXOGQ9Y2C4 368 aaKnown RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 CLCA3PQ9Y6N3 262 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 SDK1Q7Z5N4 2213 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 A0A1W2PPV9 198 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 LRIT2A6NDA9 550 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 POM121BA6NF01 834 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 LRRC72A6NJI9 287 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 H0Y8X5 98 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 NDUFA2O43678 99 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 LCMT2O60294 686 aaKnown RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 SEMA4FO95754 770 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 STAT5AP42229 794 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 OMPP47874 163 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 RAB25P57735 213 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 ABATP80404 500 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 MAP4K2Q12851 820 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 ZNF155Q12901 538 aaPredicted RBP12.34□□□□□ -0.43
VPS4A-204ENST00000566354 SLC9A5Q14940 896 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 ZNF311Q5JNZ3 666 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 CLEC12AQ5QGZ9 265 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 METRNLQ641Q3 311 aa12.34□□□□□ -0.43
VPS4A-204ENST00000566354 OR4F15Q8NGB8 312 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms